View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-1 (Length: 737)
Name: NF0091-INSERTION-1
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 38 - 737
Target Start/End: Complemental strand, 37925541 - 37924842
Alignment:
| Q |
38 |
aaaatatatctttaattaagatatgaggataaaaatgagtgaagtagcatctcaaaaagtgttttaagctcttgaaaaaatgttattaaccagtgagagc |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925541 |
aaaatatatctttaattaagatatgaggataaaaatgagtgaagtagcatctcaaaaagtgttttaagctcttgaaaaaatgttattaaccagtgagagc |
37925442 |
T |
|
| Q |
138 |
taatggtgaatcacaacattactaatctatatatttggtaagtatagtgaatgacattgttcatcaataaatgattatagttttgcataaatatgattag |
237 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925441 |
taatggtgaatgacaacattactaatctatatatttggtaagtatagtgaatggcattgttcatcaataaatgattatagttttgcataaatatgattag |
37925342 |
T |
|
| Q |
238 |
gtggcaatttcaagaggattaaatggcattggactagccattgtaattccagcaattcagtctctagttgctgactccaccattgatagcaaccgtggtg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925341 |
gtggcaatttcaagaggattaaatggcattggactagccattgtaattccagcaattcagtctctagttgctgactccaccattgatagcaaccgtggtg |
37925242 |
T |
|
| Q |
338 |
tggcatttgggtggctacaactaacaggaaaccttggaagtattattggtggtcttttctcagtactactagcctcaacatcaatctttggcatatctgg |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925241 |
tggcatttgggtggctacaactaacaggaaaccttggaagtattattggtggtcttttctcagtactactagcctcaacatcaatctttggcatatctgg |
37925142 |
T |
|
| Q |
438 |
ttggagaatagcttttcatctggttgcattgattagtgttatagttggtatattggtacgcatctatgctaatgatccacactttccaaaaaatgacaac |
537 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37925141 |
ttggagaatagcttttcatctggttgcattgattagtgttatagttggtatattggtacgcatctatgctaatgatccacactttccaaaaaatgacaac |
37925042 |
T |
|
| Q |
538 |
agatatcgaacttcaaaccagtccttttattctgaaataaaagacctaaataaaagaagcaaaatcggttat-aaaattccatcgtttcagataatagta |
636 |
Q |
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| T |
37925041 |
agatatcaaacttcaaaccagtccttttattctgaaataaaagacct-aataaaagaagcaaaatcggttataaaaattccatcgtttcagataatagta |
37924943 |
T |
|
| Q |
637 |
gctca-ggagtttttggatcatttcccatggtcaggtttgtcatttgccactctttggttagaactaataggcttctcgcatggtacaacagcaattctc |
735 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37924942 |
gctcagggagtttttggatca-ttcccatggtcaggtttgtcatttgccactctttggttagaactaataggcttctcacatggtacaacagcaattctc |
37924844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 235 - 732
Target Start/End: Complemental strand, 37921510 - 37921004
Alignment:
| Q |
235 |
taggtggcaatttcaagaggattaaatggcattggactagccattgtaattccagcaattcagtctctagttgctgactccaccattgatagcaaccgtg |
334 |
Q |
| |
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||||| ||||||||||||| || ||||| |||||||||||||| || ||||||||||| ||||| ||| |||| |||||||| |||||||||||||||| |
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| T |
37921510 |
taggttgcaatttcaagagctttcaatgggattggactagccatcgttattccagcaatccagtccctaattgccgactccacaattgatagcaaccgtg |
37921411 |
T |
|
| Q |
335 |
gtgtggcatttgggtggctacaactaacaggaaaccttggaagtattattggtggtcttttctcagtactactagcctcaacatcaatctttggcatatc |
434 |
Q |
| |
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|||| || ||||||||||| || |||||||||||||| ||||| || |||||| ||| || ||||||||||||||||||||||||||||||| ||||| |
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| T |
37921410 |
gtgtagcttttgggtggcttcatctaacaggaaacctcggaagcatcattggttctctctttgcagtactactagcctcaacatcaatctttggtatatc |
37921311 |
T |
|
| Q |
435 |
tggttggagaatagcttttcatctggttgcattgattagtgttatagttggtatattggtacgcatctatgctaatgatccacactttccaa-------- |
526 |
Q |
| |
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||||||||||||||||||||| | ||||||||| | ||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
37921310 |
tggttggagaatagcttttcacattgttgcattggtgagtgtcatagttggtatattagtacgcatctttgctaatgatccacactttccaaaagacaac |
37921211 |
T |
|
| Q |
527 |
aaaatgacaaca-gatatcgaacttcaaaccagtccttttattctgaaataaaagacctaaataaaagaagcaaaatcggttataaaa-ttccatcgttt |
624 |
Q |
| |
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||||| || ||| ||||| |||| ||||| ||||||||||||| ||||| ||||| || ||||| |||||||||| | || |||||| ||||||| ||| |
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| T |
37921210 |
aaaattactacatcatatcaaactccaaacaagtccttttattcagaaatgaaagatct-aataacagaagcaaaaacagtcataaaagttccatcattt |
37921112 |
T |
|
| Q |
625 |
cagataatagtagctca-ggagtttttggatcatttcccatggtcaggtttgtcatttgccactctttggttagaactaataggcttctcgcatggtaca |
723 |
Q |
| |
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|||||||| |||||||| ||||| |||||||| ||| | | ||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
37921111 |
cagataattgtagctcagggagtatttggatcgttt-cgagggtcaagtttatcatttttcactctttggttagaactaataggcttctcacatggtaca |
37921013 |
T |
|
| Q |
724 |
acagcaatt |
732 |
Q |
| |
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||||||||| |
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| T |
37921012 |
acagcaatt |
37921004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 234 - 713
Target Start/End: Complemental strand, 37936512 - 37936027
Alignment:
| Q |
234 |
ttaggtggcaatttcaagaggattaaatggcattggactagccattgtaattccagcaattcagtctctagttgctgactccaccattgatagcaaccgt |
333 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| ||| || |||||||||||||| |||||||||| ||| |
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| T |
37936512 |
ttaggtggcaatttcaagaggtttaaatgggattggacttgccattgttgctccagcaattctgtccctggttgctgactccactgttgatagcaatcgt |
37936413 |
T |
|
| Q |
334 |
ggtgtggcatttgggtggctacaactaacaggaaaccttggaagtattattggtggtcttttctcagtactactagcctcaacatcaatctttggcatat |
433 |
Q |
| |
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|| |||| ||||||||||| ||||| ||||||||||||||||| || |||||| ||| || | ||||| |||||||||||||| |||||||||||| |
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| T |
37936412 |
ggcatggcttttgggtggctgcaacttacaggaaaccttggaagcatcattggtaatctctttgctgtactgctagcctcaacatcgatctttggcatac |
37936313 |
T |
|
| Q |
434 |
ctggttggagaatagcttttcatctggttgcattgattagtgttatagttggtatattggtacgcatctatgctaatgatccacactttccaaaaaatga |
533 |
Q |
| |
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|||||||||||||||||||||| | ||||||||| | ||| | |||||||||||||| ||| |||||| ||||||||||||||| ||| |||| || | |
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| T |
37936312 |
ctggttggagaatagcttttcacattgttgcattggtgagtatcatagttggtatattagtaggcatctttgctaatgatccacagttttcaaagaaagc |
37936213 |
T |
|
| Q |
534 |
c--aacag----atatcgaacttcaaaccagtccttttattctgaaataaaagacctaaataaaagaagcaaaatcggttataa-aattccatcgtttca |
626 |
Q |
| |
|
| || || ||||| | || ||||| || |||||||||||||||| ||||| || | | ||||||||||| || ||||||| ||||||| | ||||| |
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| T |
37936212 |
cggaagagctacatatcaagctccaaacaagcccttttattctgaaatgaaagatct-actgaaagaagcaaagtcagttataagaattccaacatttca |
37936114 |
T |
|
| Q |
627 |
gataatagtagctc-aggagtttttggatcatttcccatggtcaggtttgtcatttgccactctttggttagaactaataggcttctc |
713 |
Q |
| |
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||| | || |||| |||||| | |||||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
37936113 |
aatacttgtggctcaaggagtctccggatcatttccc-tggtctgcgttgtcatttgccactctttggctagaattaataggcttctc |
37936027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 368
Target Start/End: Original strand, 26286768 - 26286902
Alignment:
| Q |
234 |
ttaggtggcaatttcaagaggattaaatggcattggactagccattgtaattccagcaattcagtctctagttgctgactccaccattgatagcaaccgt |
333 |
Q |
| |
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|||||| ||| ||||| ||||||||||||| ||||| || || |||||| ||| ||||||||||| |||||||| ||||| || ||||| ||| ||| |
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| T |
26286768 |
ttaggtagcagtttcacgaggattaaatgggattggtcttgcacttgtaactcctgcaattcagtccctagttgcagactctactgatgataacaatcgt |
26286867 |
T |
|
| Q |
334 |
ggtgtggcatttgggtggctacaactaacaggaaa |
368 |
Q |
| |
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|| |||| ||||| ||||| |||||||| ||||| |
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|
| T |
26286868 |
ggcatggcttttggatggcttcaactaaccggaaa |
26286902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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