View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-11 (Length: 744)
Name: NF0091-INSERTION-11
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 116 - 744
Target Start/End: Complemental strand, 44731784 - 44731156
Alignment:
| Q |
116 |
gtttgtaatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
215 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731784 |
gtttgtaaattgacctttcctcacatcgattccagcatttatctcaccttgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaacca |
44731685 |
T |
|
| Q |
216 |
gcattctcggccaaagtatacggaatgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacaccca |
315 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
44731684 |
gcattctcggccaaagtatacggaatgacttcgagtgcctcagcaaatgcttgaatgcaggaaccttccatcccatgcagcacctttgcccaagcaccca |
44731585 |
T |
|
| Q |
316 |
actgcctcgacaactcaatctggggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcct |
415 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731584 |
actgcctcgacaactcaatctcgggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcct |
44731485 |
T |
|
| Q |
416 |
ctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtc-ttacccatatccttaacacctgaaatctttacaatcttcccatc |
514 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44731484 |
ctgcgcttcatcaagcacaagcaagttggatccacgaacaagcacagttgtggtctttacccatatccttaacacctgaaatc-ttacaatcttcccatc |
44731386 |
T |
|
| Q |
515 |
atccccaagagcaacctcctccacaagatcagcataacccaacatctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggt |
614 |
Q |
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| T |
44731385 |
atccccaagagcaacctcctccacaagatcagcataacccaacttctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggt |
44731286 |
T |
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| Q |
615 |
aataatcttaatctcatcgcattcaacatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaata |
714 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731285 |
aataatctcaatctcattgcattcaacatccttaatcaccaaaatgttagctttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaata |
44731186 |
T |
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| Q |
715 |
ctctcctcctgagtcaacaacacattacat |
744 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44731185 |
ctctcctcctgagtcaacaacacattacat |
44731156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 44734626 - 44734513
Alignment:
| Q |
8 |
aaacctacctcacacatcaatcttcaaaatcatctgcacacaatctgttgctatagtgatagcacttgtgcttacgagcagtggctggacgacattatcc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44734626 |
aaacctacctcacacatcaatcttcaaaatcatctgcacacaatctgttgctatagtgatagcacttgtgcttacgagcagtggctggacgacattatcc |
44734527 |
T |
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| Q |
108 |
tccaagatgtttgt |
121 |
Q |
| |
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|||||||||||||| |
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| T |
44734526 |
tccaagatgtttgt |
44734513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 307; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 22 - 718
Target Start/End: Complemental strand, 50702417 - 50701725
Alignment:
| Q |
22 |
catcaatcttcaaaatcatctgcacacaatctgttgctatagtgatagcacttgtgcttacgagcagtggctggacgacattatcctccaagatgtttgt |
121 |
Q |
| |
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||||||||||||||||||| |||||| ||||| || | ||||| ||||||||||| || |||| |||||| || ||||| ||||| | ||||||||| |
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| T |
50702417 |
catcaatcttcaaaatcattctcacacactctgtggccaaggtgatggcacttgtgctaaccagcaatggctgcaccacattctcctcaaggatgtttgt |
50702318 |
T |
|
| Q |
122 |
aatttgacctttcctcacattgattccagcatttatctcaccctgtgcatgacgattcctcagctcagtaacaatcgcaatcggattcaaaccagcattc |
221 |
Q |
| |
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||||||||||||||| ||||||||||||| ||| |||||||| | |||||||||||||| |||||||||||||| |||||||| |||||||| |||||| |
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| T |
50702317 |
aatttgacctttcctgacattgattccagtattgatctcacctttagcatgacgattccttagctcagtaacaattgcaatcgggttcaaacccgcattc |
50702218 |
T |
|
| Q |
222 |
tcggccaaagtatacggaatgacttcaagtgcctcagcaaatgcttgaatgcaggaactttccatcccatgcagcacctttgcccaaacacccaactgcc |
321 |
Q |
| |
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|| || | ||||| |||| ||||||||||||||||||||||| |||| ||| ||| ||||| ||||||| ||||| |||||| ||||||| |||| |
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| T |
50702217 |
tcagcaagtgtatatggaacaacttcaagtgcctcagcaaatgcacgaatacagtaaccctccatgccatgcaaaaccttagcccaagcacccaattgcc |
50702118 |
T |
|
| Q |
322 |
tcgacaactcaatctggggcgctccaccaccagcaatcaaaaacctcttaccaaccaaacacctaacaacacacaaagcatcatgcaaactcctctacgc |
421 |
Q |
| |
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|||||| ||| |||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | || || |
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| T |
50702117 |
tcgacagctctatctccggagcaccaccacctgcaatcaaaaacctcttggcaaccaaacacctaacaacacacaaagcatcatgcagacttcgctcagc |
50702018 |
T |
|
| Q |
422 |
ttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtcttacccatatccttaacacctgaaatctttacaatcttcccatcatcccca |
521 |
Q |
| |
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|||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||| |||||||||| |||||||| |
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| T |
50702017 |
ttcatcgagcacaagcaaattagatccacgaacaagcacagttgtggtctttcccatatccttaataccagaaatcttcacaatcttcc---catcccca |
50701921 |
T |
|
| Q |
522 |
agagcaacctcctccacaagatcagcataacccaacatctctttacaaaaatgctcaatattagccaataggcaaacaattaagtgtcttggtaataatc |
621 |
Q |
| |
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|||| || ||| || ||||||||||||||||||||| |||| || |||||| |||||||||| ||||||||||||||||||| ||||||||||| | | |
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| T |
50701920 |
agagaaagctcttctacaagatcagcataacccaacttctcagcacgaaaatgttcaatattag-caataggcaaacaattaagagtcttggtaatgaac |
50701822 |
T |
|
| Q |
622 |
ttaatctcatcgcattcaacatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactct |
718 |
Q |
| |
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| |||||| || | |||||||| |||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
50701821 |
tcaatctcgtcacgctcaacatctttaatcactaaaatcttagctttagcaagataatgcaaagacaaatcagtaacagcatctctcaaaatactct |
50701725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 388 - 505
Target Start/End: Complemental strand, 20827156 - 20827039
Alignment:
| Q |
388 |
caacacacaaagcatcatgcaaactcctctacgcttcatcaagcacaagcaagttggatccacgaacaagcacagttttggtcttacccatatccttaac |
487 |
Q |
| |
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|||||||||||||||| |||| ||| | || ||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||||||| ||| |
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| T |
20827156 |
caacacacaaagcatcgtgcagacttcgctcaccttcatcgagcacaagcaaattagatccacgaacaagcacagttgtggtctttcccatatccctaat |
20827057 |
T |
|
| Q |
488 |
acctgaaatctttacaat |
505 |
Q |
| |
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||| |||||||| ||||| |
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| T |
20827056 |
accagaaatcttcacaat |
20827039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 640 - 718
Target Start/End: Complemental strand, 20826854 - 20826776
Alignment:
| Q |
640 |
acatccttaatcaccaaaatgttagttttagcaagataatgcaaagacaaatcagtagcagcatcactcaaaatactct |
718 |
Q |
| |
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||||| ||||||||||||| |||| |||| |||||||||||||||||||||||| | || |||| ||||||||||||| |
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| T |
20826854 |
acatctttaatcaccaaaaacttagctttaacaagataatgcaaagacaaatcagcaacaacatctctcaaaatactct |
20826776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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