View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0091-INSERTION-12 (Length: 685)

Name: NF0091-INSERTION-12
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0091-INSERTION-12
NF0091-INSERTION-12
[»] chr7 (10 HSPs)
chr7 (10-152)||(32859233-32859381)
chr7 (11-120)||(7677710-7677819)
chr7 (11-120)||(4261243-4261353)
chr7 (11-120)||(38072191-38072301)
chr7 (10-120)||(37864205-37864317)
chr7 (45-120)||(38779498-38779573)
chr7 (10-121)||(38071935-38072048)
chr7 (10-120)||(4261494-4261606)
chr7 (10-120)||(17145660-17145773)
chr7 (10-116)||(669001-669109)
[»] chr1 (16 HSPs)
chr1 (10-159)||(17050447-17050601)
chr1 (10-152)||(12925873-12926021)
chr1 (10-116)||(20794331-20794437)
chr1 (21-152)||(31390734-31390871)
chr1 (10-119)||(47334238-47334348)
chr1 (59-154)||(40649516-40649618)
chr1 (44-155)||(46133689-46133807)
chr1 (21-120)||(6076012-6076111)
chr1 (10-119)||(23440656-23440766)
chr1 (10-120)||(9948033-9948145)
chr1 (10-119)||(6076766-6076876)
chr1 (31-120)||(9948807-9948897)
chr1 (41-121)||(16271078-16271159)
chr1 (21-120)||(48972354-48972455)
chr1 (41-120)||(16270245-16270325)
chr1 (56-120)||(50827037-50827101)
[»] chr3 (16 HSPs)
chr3 (21-114)||(8436575-8436668)
chr3 (21-151)||(8440120-8440256)
chr3 (10-119)||(45500512-45500621)
chr3 (11-120)||(36750083-36750193)
chr3 (11-120)||(52492179-52492289)
chr3 (10-120)||(38922781-38922893)
chr3 (10-121)||(41756330-41756443)
chr3 (10-120)||(36750336-36750447)
chr3 (10-121)||(45242103-45242216)
chr3 (10-120)||(44686292-44686404)
chr3 (10-120)||(44687061-44687173)
chr3 (10-119)||(3971800-3971911)
chr3 (10-119)||(3997967-3998078)
chr3 (56-120)||(19132758-19132822)
chr3 (10-120)||(38923563-38923675)
chr3 (41-120)||(45242917-45242997)
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-121)||(27258-27368)
[»] chr8 (5 HSPs)
chr8 (11-116)||(5035177-5035282)
chr8 (10-120)||(37639749-37639861)
chr8 (10-120)||(32536746-32536858)
chr8 (21-61)||(10501824-10501864)
chr8 (10-120)||(34992162-34992274)
[»] chr5 (8 HSPs)
chr5 (11-120)||(33001970-33002079)
chr5 (588-643)||(6163507-6163562)
chr5 (21-99)||(42518811-42518890)
chr5 (21-120)||(8204158-8204259)
chr5 (10-120)||(33002714-33002826)
chr5 (31-120)||(12190078-12190168)
chr5 (10-121)||(15183126-15183239)
chr5 (41-120)||(15183947-15184027)
[»] chr4 (19 HSPs)
chr4 (10-120)||(36451326-36451437)
chr4 (11-120)||(39523172-39523281)
chr4 (10-115)||(17648043-17648149)
chr4 (38-120)||(11806129-11806211)
chr4 (10-120)||(45230403-45230515)
chr4 (41-119)||(9939161-9939240)
chr4 (10-121)||(21166273-21166386)
chr4 (10-120)||(11417725-11417837)
chr4 (10-120)||(29651230-29651342)
chr4 (41-120)||(36865647-36865727)
chr4 (41-120)||(39522413-39522493)
chr4 (21-120)||(36450766-36450867)
chr4 (41-120)||(10424989-10425069)
chr4 (41-120)||(11417867-11417947)
chr4 (21-53)||(23383415-23383447)
chr4 (41-120)||(26611213-26611293)
chr4 (41-120)||(36864855-36864935)
chr4 (10-120)||(38143635-38143747)
chr4 (41-120)||(38694740-38694820)
[»] scaffold0700 (1 HSPs)
scaffold0700 (21-152)||(5319-5456)
[»] chr6 (8 HSPs)
chr6 (10-120)||(22579973-22580085)
chr6 (10-121)||(15082434-15082547)
chr6 (10-121)||(33018204-33018317)
chr6 (10-120)||(3542852-3542964)
chr6 (11-120)||(33480527-33480638)
chr6 (20-120)||(7193376-7193475)
chr6 (41-120)||(3542993-3543073)
chr6 (10-120)||(15083216-15083328)
[»] chr2 (4 HSPs)
chr2 (10-120)||(21471852-21471964)
chr2 (10-120)||(4479602-4479712)
chr2 (41-121)||(37548035-37548116)
chr2 (10-117)||(38834428-38834537)
[»] scaffold0311 (1 HSPs)
scaffold0311 (10-120)||(57-170)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 6e-48; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 32859381 - 32859233
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||    
T  32859381 gacatgaaagtgagagggtggaagatagtgtaaaaaataatttaatgttgagagagtagtataagaatgtgttccacatttaatctaatgcatactatca 32859282  T
Q  110 actttcccatg------aaaaactccgttgacccatgctaaatgccacc 152  Q
    |||||||| ||      |||||||||| |||||||||||||||||||||    
T  32859281 actttcccgtgatgaaaaaaaactccgctgacccatgctaaatgccacc 32859233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7677710 - 7677819
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 110  Q
    |||||| || |||||||||||||||| ||||||||||||| || |||||||| | ||  ||||||||||||| | |||||||||||||| | || |||||    
T  7677710 acatgaaagagagagggtggaagatattgtaaaaaataatttagtgttgagagaatatgataagaatgtgttcctcatttaatctaatgaacatgatcaa 7677809  T
Q  111 ctttcccatg 120  Q
    ||||||||||    
T  7677810 ctttcccatg 7677819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 4261353 - 4261243
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    |||||| || |||||| |||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || ||||    
T  4261353 acatgaaagagagaggttggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatca 4261254  T
Q  110 actttcccatg 120  Q
    |||||||||||    
T  4261253 actttcccatg 4261243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 38072191 - 38072301
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    |||||| || ||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| ||   |||||||||||||| | || ||||    
T  38072191 acatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcatcatttaatctaatggacatgatca 38072290  T
Q  110 actttcccatg 120  Q
    |||||||||||    
T  38072291 actttcccatg 38072301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 37864205 - 37864317
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || ||    
T  37864205 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgat 37864304  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  37864305 caactttcccatg 37864317  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 38779498 - 38779573
Alignment:
Q  45 aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||| |||||||| |||| ||||||||| | || | |||||||||||||| | || |||||||||||||||    
T  38779498 aataatctagtgttgagagagtattataagaatatattcctcatttaatctaatggacatgatcaactttcccatg 38779573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 38072048 - 38071935
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  38072048 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 38071949  T
Q  108 caactttcccatga 121  Q
    ||||||||||||||    
T  38071948 caactttcccatga 38071935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 4261494 - 4261606
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| |||||||||| |||||| ||||  |||  ||| |||| | |||||||||||||| | || ||    
T  4261494 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgatagaaatatgttcctcatttaatctaatggagatgat 4261593  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  4261594 caactttcccatg 4261606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 17145773 - 17145660
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 106  Q
    ||||||| || ||||| ||| |||||||| |||||||  ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |    
T  17145773 gacatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatga 17145674  T
Q  107 tcaactttcccatg 120  Q
    ||||||||||||||    
T  17145673 tcaactttcccatg 17145660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 669001 - 669109
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | ||||| |||||||| |||| ||    
T  669001 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttgatctaatggatatgat 669100  T
Q  108 caactttcc 116  Q
    |||||||||    
T  669101 caactttcc 669109  T

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Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 17050601 - 17050447
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||  || ||||||||||||| | |||||||    
T  17050601 gacatgaaagagagagggtggaagatagtgtaaaaaataatctaatattgagagagtagtataagaatgtgtaccatatttaatctaatgaacattatca 17050502  T
Q  110 actttcccatg-----aaaaactccgttgacccatgctaaatgccaccttattat 159  Q
    |||||||||||     |||||||||  ||||| |||||||||||||||| |||||    
T  17050501 actttcccatggtgaaaaaaactccactgacctatgctaaatgccacctgattat 17050447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 12926021 - 12925873
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||| | |||||||    
T  12926021 gacatgaaagagagagggtggaagatagtgtaaaaaataatctaatgttgagagagtagtataagaatgtattccacatttaatctaatggacattatca 12925922  T
Q  110 actttcccatg------aaaaactccgttgacccatgctaaatgccacc 152  Q
    ||||| | |||      |||||||||  ||||| |||||||||||||||    
T  12925921 acttttctatggtggaaaaaaactccactgaccaatgctaaatgccacc 12925873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 20794437 - 20794331
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||||||||| |||||||    
T  20794437 gacatgaaagagagagggtggaaaatagtgtaaaaaataatctaatgttgagagagtgatataagaatgtgttccacatttaatctaatgcacattatca 20794338  T
Q  110 actttcc 116  Q
    |||||||    
T  20794337 actttcc 20794331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 31390734 - 31390871
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||| ||| |||||||||||||||||||||||||||||||| ||||| |||| |||||||| | |||||| || |||| | || |||||||||||||||    
T  31390734 gagagagtgaaagatagtgtaaaaaataatctaatgttgagagagtaggataaaaatgtgttcctcatttattccaatggacataatcaactttcccatg 31390833  T
Q  121 ------aaaaactccgttgacccatgctaaatgccacc 152  Q
          || |||||| ||||||||||||||||||||||    
T  31390834 gtgggaaagaactccattgacccatgctaaatgccacc 31390871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 47334348 - 47334238
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || |||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||| || |||||| |||||||||||||| | || |||    
T  47334348 gacatgaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttctcatttaatctaatggacataatc 47334249  T
Q  109 aactttcccat 119  Q
    |||||||||||    
T  47334248 aactttcccat 47334238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 40649516 - 40649618
Alignment:
Q  59 gagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg-------aaaaactccgttgacccatgctaaatgccac 151  Q
    |||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||       |||||||||  | ||||||||||||||||||    
T  40649516 gagagagtagtataagaatgtgttccacatttaatctaatggacattatcaactttcccatggtgaaaaaaaaactccactaacccatgctaaatgccac 40649615  T
Q  152 ctt 154  Q
    |||    
T  40649616 ctt 40649618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 46133807 - 46133689
Alignment:
Q  44 aaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg-------aaaaactccgttgacc 136  Q
    ||||||||||||||||||| ||||||||||||||||| | | |||||||||| ||| | || ||  |||||||||||       |||||||||  |||||    
T  46133807 aaataatctaatgttgagagagtagtataagaatgtgctcctcatttaatctgatggacataattcactttcccatggtggggaaaaaactccagtgacc 46133708  T
Q  137 catgctaaatgccacctta 155  Q
    |||||||||||||||||||    
T  46133707 catgctaaatgccacctta 46133689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 6076111 - 6076012
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||| |||||||||||||||||||||||| || |||||||| | ||  |||| ||||| || | |||||||||||||| | || |||||||||| ||||    
T  6076111 gagagagtggaagatagtgtaaaaaataatttagtgttgagagactatgataaaaatgtattcctcatttaatctaatggacatgatcaactttctcatg 6076012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 23440766 - 23440656
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || ||||| ||| |||||||| |||||||||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||    
T  23440766 gacatgaaagagagagtgtgaaagatagtataaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacataatc 23440667  T
Q  109 aactttcccat 119  Q
    |||||| ||||    
T  23440666 aacttttccat 23440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 9948145 - 9948033
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||    
T  9948145 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgat 9948046  T
Q  108 caactttcccatg 120  Q
    ||||||| |||||    
T  9948045 caacttttccatg 9948033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 6076766 - 6076876
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || ||||| ||| |||||||| |||||||||||||| | ||||||| ||||  ||| |||| |||| | |||||||| ||||| | || |||    
T  6076766 gacatgaaagagagagtgtgaaagatagtataaaaaataatctattggttgagagagtatgataggaatatgttactcatttaatataatggacatgatc 6076865  T
Q  109 aactttcccat 119  Q
    |||||| ||||    
T  6076866 aacttttccat 6076876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 9948807 - 9948897
Alignment:
Q  31 aagatagtgtaaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    |||||||| |||||||||||||| || |||| | ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  9948807 aagatagtataaaaaataatctagtggttgatagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 9948897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 16271078 - 16271159
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatga 121  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||||||||||||||||    
T  16271078 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatga 16271159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 48972354 - 48972455
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttccca 118  Q
    ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || ||||||||| |||    
T  48972354 gagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaacttttcca 48972453  T
Q  119 tg 120  Q
    ||    
T  48972454 tg 48972455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 16270325 - 16270245
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  16270325 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 16270245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 50827037 - 50827101
Alignment:
Q  56 gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||| ||||  |||| ||| |||||| |||||||||||||| | || |||||||||||||||    
T  50827037 gttgagagagtatgataaaaatatgtttctcatttaatctaatggacatgatcaactttcccatg 50827101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 8436575 - 8436668
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaacttt 114  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||||||||    
T  8436575 gagagagtggaagatagtgtaaaaaataatctaatgttgagaaagtagtataaaaatgtgttccacatttaatcaaatgcacattatcaacttt 8436668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 8440120 - 8440256
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||| ||||||||||||  ||||    
T  8440120 gagagagtgaaagatagtgtaaaaaataatctaatgttgagagagtagtataataatgtgttccacatttaatcaaatgcacattatcaactttttcatg 8440219  T
Q  121 ------aaaaactccgttgacccatgctaaatgccac 151  Q
          |||||||||  ||||||||||||||||||||    
T  8440220 gtgaaaaaaaactccactgacccatgctaaatgccac 8440256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 45500621 - 45500512
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| || |||||||||||||||||   ||| ||||||||| |||||||| ||||| ||||||||||||| | |||||||||||||| | || ||||    
T  45500621 gacatgaaagagagagggtggaagatagataaaacaataatctagtgttgagagagtagaataagaatgtgttcctcatttaatctaatggacataatca 45500522  T
Q  110 actttcccat 119  Q
    ||||||||||    
T  45500521 actttcccat 45500512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 36750193 - 36750083
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    |||||| || ||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || ||||    
T  36750193 acatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatgaacatgatca 36750094  T
Q  110 actttcccatg 120  Q
    ||||| |||||    
T  36750093 acttttccatg 36750083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 52492179 - 52492289
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    |||||| || ||||||||||||||||||||||||||||||||| | ||||||| ||||  |||||||||| || | |||||||||||||| | || | ||    
T  52492179 acatgaaagagagagggtggaagatagtgtaaaaaataatctagtggttgagagagtatgataagaatgtattcctcatttaatctaatggacatgaaca 52492278  T
Q  110 actttcccatg 120  Q
    ||||| |||||    
T  52492279 acttttccatg 52492289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 38922893 - 38922781
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| |||| ||    
T  38922893 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggatatgat 38922794  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  38922793 caactttcccatg 38922781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 41756330 - 41756443
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| |||||||||| |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  41756330 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgat 41756429  T
Q  108 caactttcccatga 121  Q
    ||||||||||||||    
T  41756430 caactttcccatga 41756443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 36750336 - 36750447
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaat-gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || ||||| ||| |||||||| |||||||||||||| | ||||||| ||||  |||  ||| |||| | |||||||||||||| | || |||    
T  36750336 gacatgaaagagagagtgtgaaagatagtataaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacatgatc 36750435  T
Q  109 aactttcccatg 120  Q
    ||||||||||||    
T  36750436 aactttcccatg 36750447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 45242216 - 45242103
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  45242216 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 45242117  T
Q  108 caactttcccatga 121  Q
    ||||||||||||||    
T  45242116 caactttcccatga 45242103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 44686404 - 44686292
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || ||    
T  44686404 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgat 44686305  T
Q  108 caactttcccatg 120  Q
    |||||||| ||||    
T  44686304 caactttctcatg 44686292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 44687061 - 44687173
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| |||||||||| |||||| ||||  ||| |||| | || | |||||||||||||| |||| ||    
T  44687061 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataggaatattttcctcatttaatctaatgaatatgat 44687160  T
Q  108 caactttcccatg 120  Q
    ||||||| |||||    
T  44687161 caacttttccatg 44687173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 3971800 - 3971911
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| |||| ||    
T  3971800 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgat 3971899  T
Q  108 caactttcccat 119  Q
    ||||||||||||    
T  3971900 caactttcccat 3971911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 3998078 - 3997967
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| |||| ||    
T  3998078 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggatatgat 3997979  T
Q  108 caactttcccat 119  Q
    ||||||||||||    
T  3997978 caactttcccat 3997967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 19132758 - 19132822
Alignment:
Q  56 gttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||| ||||  |||||||| |||| | |||||||||||||| | || |||||||||||||||    
T  19132758 gttgagagagtatgataagaatatgttcctcatttaatctaatggacatgatcaactttcccatg 19132822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 38923563 - 38923675
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| | |||||    
T  38923563 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatgaacattat 38923662  T
Q  108 caactttcccatg 120  Q
    ||||||| |||||    
T  38923663 caacttttccatg 38923675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 45242917 - 45242997
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||  |||| |||||||||||||||    
T  45242917 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgatcaactttcccatg 45242997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 27368 - 27258
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 110  Q
    |||||| || |||||||||||||||||||||||||||||| || |||||||| ||||  ||||||||||||| | |||||||||||||| | || |||||    
T  27368 acatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatgataagaatgtgttcctcatttaatctaatggacatgatcaa 27269  T
Q  111 ctttcccatga 121  Q
    |||||||||||    
T  27268 ctttcccatga 27258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 5035177 - 5035282
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 110  Q
    |||||| || |||||||||||||||||||||||| ||||| || |||||||| ||||  |||||||||| || | |||||||||||||| | || |||||    
T  5035177 acatgaaagagagagggtggaagatagtgtaaaacataatttagtgttgagagagtatgataagaatgtattcctcatttaatctaatggacatgatcaa 5035276  T
Q  111 ctttcc 116  Q
    ||||||    
T  5035277 ctttcc 5035282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 37639861 - 37639749
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||    
T  37639861 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatcataggaatatgttcctcatttaatctaatgaatatgat 37639762  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  37639761 caactttcccatg 37639749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 32536858 - 32536746
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  32536858 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttccccatttaatctaatggacatgat 32536759  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  32536758 caactttcccatg 32536746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 10501824 - 10501864
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgag 61  Q
    |||||||| || ||||||||||||||||||||| |||||||    
T  10501824 gagagggttgatgatagtgtaaaaaataatctagtgttgag 10501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 34992162 - 34992274
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| |||| || || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  34992162 gacatgaaagagagagtgtgaaagatagtataaaaaaataatttagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 34992261  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  34992262 caactttcccatg 34992274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 33002079 - 33001970
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 110  Q
    |||||| || |||||||||||||||||||||||||||||| || |||||||| | ||  |||||||||| || | |||||||||||||| | || |||||    
T  33002079 acatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagaatatgataagaatgtattcctcatttaatctaatggacatgatcaa 33001980  T
Q  111 ctttcccatg 120  Q
    |||| |||||    
T  33001979 cttttccatg 33001970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 588 - 643
Target Start/End: Complemental strand, 6163562 - 6163507
Alignment:
Q  588 tattgtctgatttgccattcatgattccaaaactgtaggttgtagttgtggaaagt 643  Q
    |||||||||||||| ||| ||||| |||||||||||||||| |||||| |||||||    
T  6163562 tattgtctgatttgtcatacatgactccaaaactgtaggttctagttgcggaaagt 6163507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 42518890 - 42518811
Alignment:
Q  21 gagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatg 99  Q
    ||||||||| || ||||| ||||| |||||| || |||||||||||||  |||||||| |||||| ||||||||||||||    
T  42518890 gagagggtgaaaaatagtataaaacaataatttagtgttgagatagtacgataagaatttgtttctcatttaatctaatg 42518811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 8204259 - 8204158
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttccca 118  Q
    ||||| ||| |||||||| ||||||| ||||||| || |||||||||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||    
T  8204259 gagagtgtgaaagatagtataaaaaaataatctagtggttgagatagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttccca 8204160  T
Q  119 tg 120  Q
    ||    
T  8204159 tg 8204158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 33002714 - 33002826
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  33002714 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 33002813  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  33002814 caactttcccatg 33002826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 12190078 - 12190168
Alignment:
Q  31 aagatagtgtaaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    |||||| | ||||||||||||||||| |||||| ||||  |||  ||| |||| | |||||||||||||| | || |||||||||||||||    
T  12190078 aagataatataaaaaataatctaatgattgagagagtatgatagaaatatgttcctcatttaatctaatggacatgatcaactttcccatg 12190168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 15183239 - 15183126
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| |||||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||  ||| |||| | |||||||||||||| | || ||    
T  15183239 gacatgaaagtgagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgatagaaatatgttcctcatttaatctaatggacatgat 15183140  T
Q  108 caactttcccatga 121  Q
    |||||||| |||||    
T  15183139 caactttctcatga 15183126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 15183947 - 15184027
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  15183947 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 15184027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 36451326 - 36451437
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || |||| ||||||||||||||||||| ||||||||| |||||||| ||||| ||||| || |||||  |||||||||||||| | || |||    
T  36451326 gacatgaaagagagatggtggaagatagtgtaaaacaataatctagtgttgagagagtaggataaggatttgtttttcatttaatctaatggacataatc 36451425  T
Q  109 aactttcccatg 120  Q
    |||||| |||||    
T  36451426 aacttttccatg 36451437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 39523172 - 39523281
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaa 110  Q
    |||||| || |||||||||||||||||||||||||||||| || |||||||| ||||   |||  |||| || | |||||||||||||| | || |||||    
T  39523172 acatgaaagagagagggtggaagatagtgtaaaaaataatttagtgttgagagagtatggtaaagatgtattcctcatttaatctaatggacatgatcaa 39523271  T
Q  111 ctttcccatg 120  Q
    ||||||||||    
T  39523272 ctttcccatg 39523281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 115
Target Start/End: Original strand, 17648043 - 17648149
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaa-aataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    ||||||| || |||||| ||||||||||||||||| |||||| || |||||||| ||||  |||||||| | ||||  ||||||||||||| |||| |||    
T  17648043 gacatgaaagagagaggatggaagatagtgtaaaacaataatatagtgttgagagagtaagataagaatttatttcttatttaatctaatggatataatc 17648142  T
Q  109 aactttc 115  Q
    |||||||    
T  17648143 aactttc 17648149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 11806211 - 11806129
Alignment:
Q  38 tgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    |||||||||||| ||| |||||||| ||||| |||| |||||||| | |||||||||||||| | || || ||||||||||||    
T  11806211 tgtaaaaaataaactagtgttgagagagtaggataaaaatgtgttcctcatttaatctaatggacatgattaactttcccatg 11806129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 45230515 - 45230403
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||    
T  45230515 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgat 45230416  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  45230415 caactttcccatg 45230403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 9939240 - 9939161
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccat 119  Q
    ||||||||||||| || |||||| ||||  |||||||| |||||| |||||||||||||| | || ||||||||||||||    
T  9939240 aaaaaataatctagtggttgagagagtatgataagaatatgtttctcatttaatctaatggacatgatcaactttcccat 9939161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 21166273 - 21166386
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  21166273 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 21166372  T
Q  108 caactttcccatga 121  Q
    ||||||||||||||    
T  21166373 caactttcccatga 21166386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 11417837 - 11417725
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaa-ataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| |||||| |||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  11417837 gacatgaaagagagagtgtgaaagatagtataaaaatataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 11417738  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  11417737 caactttcccatg 11417725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 29651230 - 29651342
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||  |||| ||    
T  29651230 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgat 29651329  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  29651330 caactttcccatg 29651342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 36865647 - 36865727
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||||||||||||||    
T  36865647 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatg 36865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 39522493 - 39522413
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| |||||||||||||||    
T  39522493 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgatcaactttcccatg 39522413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 36450867 - 36450766
Alignment:
Q  21 gagagggtggaagatagtgtaaaa-aataatctaatgt-tgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttccca 118  Q
    |||| ||||||||||||||||||| || |||||| ||| ||||| ||||| ||||  || |||| | ||||||||| |||| | || |||||||||||||    
T  36450867 gagatggtggaagatagtgtaaaacaacaatctagtgtatgagagagtaggataaagatttgttactcatttaatccaatggacataatcaactttccca 36450768  T
Q  119 tg 120  Q
    ||    
T  36450767 tg 36450766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 10424989 - 10425069
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| | || | |||||||||||||| |||| |||||||||||||||    
T  10424989 aaaaaataatctagtggttgagagagtatgataggaatatattcctcatttaatctaatggatatgatcaactttcccatg 10425069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 11417867 - 11417947
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  11417867 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 11417947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 23383447 - 23383415
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatcta 53  Q
    ||||||||||||||||||||||||| |||||||    
T  23383447 gagagggtggaagatagtgtaaaaattaatcta 23383415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 26611213 - 26611293
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  26611213 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 26611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 36864935 - 36864855
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||||| |||||||||||||| | || |||||||||| ||||    
T  36864935 aaaaaataatctagtggttgagagagtatgataggaatatgtttctcatttaatctaatggacatgatcaactttctcatg 36864855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 38143635 - 38143747
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |     
T  38143635 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgac 38143734  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  38143735 caactttcccatg 38143747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 38694820 - 38694740
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||||||||| |||||    
T  38694820 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaatatgatcaacttttccatg 38694740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0700 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 5456 - 5319
Alignment:
Q  21 gagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccat- 119  Q
    ||||| ||||||||||   |||||||||||||| | | || | ||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||| ||     
T  5456 gagagtgtggaagatatcataaaaaataatctagtatggaaagagtaggataagaatgtgtttctcatttaatctaatggatataatctactttcctata 5357  T
Q  120 ----ga-aaaactccgttgacccatgctaaatgccacc 152  Q
        || |||||| | ||||||||||||||||||||||    
T  5356 gtgggagaaaacttcattgacccatgctaaatgccacc 5319  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 22580085 - 22579973
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||    
T  22580085 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtgattgagagagtatgataggaatatgttcctcatttaatctaatggatatgat 22579986  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  22579985 caactttcccatg 22579973  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 15082547 - 15082434
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  15082547 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgat 15082448  T
Q  108 caactttcccatga 121  Q
    ||||||||||||||    
T  15082447 caactttcccatga 15082434  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 33018317 - 33018204
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| |||||||||| |||||| ||||  |||| ||| |||| | |||||||||||||| | || ||    
T  33018317 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctaatggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgat 33018218  T
Q  108 caactttcccatga 121  Q
    ||||||||| ||||    
T  33018217 caactttccaatga 33018204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 3542964 - 3542852
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||    
T  3542964 gacatgaaagagagagtgtgaaagatagtttaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacatgat 3542865  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  3542864 caactttcccatg 3542852  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 33480527 - 33480638
Alignment:
Q  11 acatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatc 108  Q
    |||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||    
T  33480527 acatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatc 33480626  T
Q  109 aactttcccatg 120  Q
    ||||||||||||    
T  33480627 aactttcccatg 33480638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 7193475 - 7193376
Alignment:
Q  20 tgagagggtggaagatagtgtaaaaaa-taatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttccca 118  Q
    |||||| ||| |||||||| ||||||| ||||||   ||||||| ||||  |||||||| |||| | |||||||||||||| | || |||||||||||||    
T  7193475 tgagagtgtgaaagatagtataaaaaaataatctg--gttgagagagtatgataagaatatgttcctcatttaatctaatggagatgatcaactttccca 7193378  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 3542993 - 3543073
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatg 120  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |||||||||||||||    
T  3542993 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatg 3543073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 15083216 - 15083328
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||  |||| ||    
T  15083216 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatagatatgat 15083315  T
Q  108 caactttcccatg 120  Q
    |||||||| ||||    
T  15083316 caactttctcatg 15083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 21471852 - 21471964
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| |||| ||    
T  21471852 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggatatgat 21471951  T
Q  108 caactttcccatg 120  Q
    |||||||||||||    
T  21471952 caactttcccatg 21471964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 4479602 - 4479712
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaataatctaatgttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatca 109  Q
    ||||||| || |||| | || |||||| | ||||||||||| || ||| |||| ||||  |||||||| |||| | |||||||||||||| | || || |    
T  4479602 gacatgaaagagagatgatgaaagataatataaaaaataatttagtgtggagagagtatgataagaatatgttcctcatttaatctaatggacatgatta 4479701  T
Q  110 actttcccatg 120  Q
    |||||||||||    
T  4479702 actttcccatg 4479712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 37548116 - 37548035
Alignment:
Q  41 aaaaaataatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattatcaactttcccatga 121  Q
    ||||||||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || ||||||||||||||||    
T  37548116 aaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatggacatgatcaactttcccatga 37548035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 38834537 - 38834428
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa-taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatattat 107  Q
    ||||||| || ||||| ||| |||||||| ||||||| ||||||| || |||||| ||||  |||| ||| |||| | |||||||||||||| | || ||    
T  38834537 gacatgaaagagagagtgtgaaagatagtataaaaaaataatctagtggttgagagagtatgataaaaatatgttcctcatttaatctaatggacatgat 38834438  T
Q  108 caactttccc 117  Q
    ||||||||||    
T  38834437 caactttccc 38834428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 120
Target Start/End: Original strand, 57 - 170
Alignment:
Q  10 gacatgatagtgagagggtggaagatagtgtaaaaaa--taatctaatg-ttgagatagtagtataagaatgtgtttcacatttaatctaatgcatatta 106  Q
    ||||||| || ||||| ||| |||||||| |||||||  ||||||| || |||||| ||||  ||| |||| |||| | |||||||||||||| | || |    
T  57 gacatgaaagagagagtgtgaaagatagtataaaaaaaataatctagtggttgagagagtatgataggaatatgttcctcatttaatctaatgaacataa 156  T
Q  107 tcaactttcccatg 120  Q
    ||||||||||||||    
T  157 tcaactttcccatg 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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