View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-14 (Length: 690)
Name: NF0091-INSERTION-14
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-14 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 103 - 690
Target Start/End: Original strand, 33909510 - 33910079
Alignment:
| Q |
103 |
agattggtactttgctgaggaaaatagattggaagggaaaagaagtctgtcatatatcctggtcgatgtttgtcagtttggcctgattcaaaagacaaca |
202 |
Q |
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| T |
33909510 |
agattggtactttgctgaggaaaatagattggaagggaaaagaagtctgtcctatatcctggtcgatgtttgtcagtttggcctgattcaaaagacacca |
33909609 |
T |
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| Q |
203 |
ttaggaattttcaattccagatatcatgttataaaatttttgtgacttcagaggttaaaaaataaaacatagttcataatcatatcaatatcatgcctct |
302 |
Q |
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| T |
33909610 |
ttaggaattttcaattccagatatcatgttataaaatttttgtgacttcagaggttaaaaaataaaacatagttcataatc------atatcatgcctct |
33909703 |
T |
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| Q |
303 |
caaaaaactgttcatatcattataatcagttatttcaaaaaaatcattataataagttgaag-nnnnnnnnnncataacaattcatatattcccaaccct |
401 |
Q |
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| T |
33909704 |
caaaaaactgttcatatcattataatcagttatttcaaaaaaatcattataatcagttgaagaaaaaaaaaaacataacaattcgtatattcccaacctt |
33909803 |
T |
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| Q |
402 |
acaaatatattgtccaaaagattgtacatg--attggcaactcagaattaattgttttgctgaacaacttttcatcaaattgacat-aaaaaattgcaca |
498 |
Q |
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| T |
33909804 |
acaaatatattgtccgaaagattgcacatgatattggcaactcagaattaattgttttgccgaacaacttttcatcaaattcacataaaaaaattgcaca |
33909903 |
T |
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| Q |
499 |
tgattgaaccctttaaagcaatattacgatatgttacttgttagtttggtggcattgataaacttttgattttgattaaatacatgttgcggaccttgtg |
598 |
Q |
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| T |
33909904 |
tgattggaccctttaaagcaatattacgatatgttacttgttagtttggtgccattgataaacttttgattttgattaaatacatgttgtggaccttgtg |
33910003 |
T |
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| Q |
599 |
agttaaggcaaaacagtgttaatgctcttagaggaagaccgttggagcacatttgcaagtgcttttataatttttcaatctgcccctatatt |
690 |
Q |
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| T |
33910004 |
a----------------gttaatgctcttagaggaagaccgttggagcacatttgcaagtgcttttataatttttcaatctgcccctatatt |
33910079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 108
Target Start/End: Original strand, 33909394 - 33909492
Alignment:
| Q |
10 |
aactacgcttttctaccaaagaaataaacaaaaagcctcgaggacaatcaaatattaagattttgtaatctgatatctggaatttaagatttcagattg |
108 |
Q |
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| T |
33909394 |
aactacgctttcctaccaaagaaataaacaaaaagcctcgaggacaatcaaagattaagattttgtaatctgatatctggaatttaagatttcaaattg |
33909492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 33924726 - 33924774
Alignment:
| Q |
211 |
tttcaattccagatatcatgttataaaatttttgtgacttcagaggtta |
259 |
Q |
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| T |
33924726 |
tttcaactccagatatcatattataaaattttggtgacttcagaggtta |
33924774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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