View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0091-INSERTION-15 (Length: 748)

Name: NF0091-INSERTION-15
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0091-INSERTION-15
NF0091-INSERTION-15
[»] chr7 (5 HSPs)
chr7 (7-748)||(46936587-46937322)
chr7 (380-483)||(36853049-36853151)
chr7 (404-482)||(24547692-24547770)
chr7 (428-482)||(46766091-46766145)
chr7 (422-482)||(35169991-35170049)
[»] chr1 (8 HSPs)
chr1 (111-322)||(36634994-36635208)
chr1 (623-705)||(36639514-36639596)
chr1 (618-702)||(36634749-36634833)
chr1 (185-312)||(36639699-36639826)
chr1 (378-462)||(16979579-16979663)
chr1 (426-485)||(420501-420560)
chr1 (404-485)||(974465-974546)
chr1 (422-476)||(15954009-15954063)
[»] chr5 (5 HSPs)
chr5 (374-483)||(35035586-35035695)
chr5 (424-482)||(16230755-16230813)
chr5 (422-471)||(16252635-16252684)
chr5 (423-482)||(8012027-8012086)
chr5 (430-476)||(36639753-36639799)
[»] chr8 (3 HSPs)
chr8 (424-482)||(26762885-26762943)
chr8 (422-482)||(30011734-30011794)
chr8 (423-482)||(26815559-26815620)
[»] chr3 (6 HSPs)
chr3 (423-473)||(43244854-43244904)
chr3 (431-475)||(42336425-42336469)
chr3 (424-485)||(48553065-48553124)
chr3 (380-419)||(45161775-45161814)
chr3 (422-472)||(7928767-7928817)
chr3 (422-460)||(33262587-33262624)
[»] chr4 (2 HSPs)
chr4 (405-482)||(6468691-6468768)
chr4 (424-462)||(6959316-6959354)
[»] scaffold0312 (1 HSPs)
scaffold0312 (426-485)||(10011-10070)
[»] chr2 (4 HSPs)
chr2 (379-484)||(10231798-10231903)
chr2 (424-474)||(26804046-26804096)
chr2 (381-482)||(5262383-5262484)
chr2 (428-469)||(9529531-9529572)
[»] chr6 (3 HSPs)
chr6 (404-476)||(4593883-4593955)
chr6 (423-483)||(8782990-8783050)
chr6 (422-461)||(6893758-6893797)


Alignment Details
Target: chr7 (Bit Score: 690; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 7 - 748
Target Start/End: Original strand, 46936587 - 46937322
Alignment:
Q  7 agaataaaatcaatttcgtttaaaacactaaacaaattatttagaacttgagcttgagaaggaatggcattttgtctgagaaaggagggtcagagtattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46936587 agaataaaatcaatttcgtttaaaacactaaacaaattatttagaacttgagcttgagaaggaatggcattctgtctgagaaaggagggtcagagtattt 46936686  T
Q  107 tccagtgagaatctttgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgct 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936687 tccagtgagaatctgtgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgct 46936786  T
Q  207 gtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgccataataggtt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46936787 gtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgccataataggtt 46936886  T
Q  307 gttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatttatactatactaagagtttaattttgatgcactcttggtg 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||    
T  46936887 gttcaaaccctgcaaatatataataatattacaaatttaacaactcttggaaaagttatt-----tatactaagagtttaattttgatgcactcttggtg 46936981  T
Q  407 taaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattcaca 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46936982 taaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgtgatgattataatttattgaca 46937081  T
Q  507 gcataaaaagctttacaccaacgatgtattatatataaaatcatattacaaactctaaaggaaaaatcaatgaaatagataaatgtaataagccaagtta 606  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46937082 gcataaaaagctttacaccaacgatgta-tatatataaaatcataatacaaactctaaaggaaaaatcaatgaaatagataaatgcaataagccaagtta 46937180  T
Q  607 ctaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttacta 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46937181 ctaaccgtatcttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttacta 46937280  T
Q  707 cacagagcatgaagttgtaggttaaaggttttagcagcttgg 748  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  46937281 cacagagcatgaagttgtaggttaaaggttttaacagcttgg 46937322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 483
Target Start/End: Original strand, 36853049 - 36853151
Alignment:
Q  380 gagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatc 479  Q
    ||||||||||||||| |||| | ||| |||||||||| |   |||||  ||||||||| |||||||||||||||||||||||| | ||||||||| ||||    
T  36853049 gagtttaattttgatacactgtcggtataaaaagttt-acattgtcagtaaatcacaaccaatcatatgtgtgactttagaagtagttatgattataatc 36853147  T
Q  480 aaat 483  Q
    ||||    
T  36853148 aaat 36853151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 482
Target Start/End: Original strand, 24547692 - 24547770
Alignment:
Q  404 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    |||||||||||||||   |||||| ||||||||| ||||||||| ||||| |||||||| | |||||||| || |||||    
T  24547692 gtgtaaaaagttttacactgtcaataaatcacaaccaatcatatctgtgattttagaagtagttatgattgaagtcaaa 24547770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 428 - 482
Target Start/End: Complemental strand, 46766145 - 46766091
Alignment:
Q  428 caaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    ||||||| || ||||||||||||||||||||||||||  |||||||||| |||||    
T  46766145 caaatcataaccaatcatatgtgtgactttagaagcaggtatgattaaagtcaaa 46766091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 422 - 482
Target Start/End: Complemental strand, 35170049 - 35169991
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    ||||||||||||| || |||||||  ||||||||||||||| | ||||||||||| |||||    
T  35170049 tgtcaacaaatcataaccaatcat--gtgtgactttagaagtagttatgattaaagtcaaa 35169991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 2e-39; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 111 - 322
Target Start/End: Complemental strand, 36635208 - 36634994
Alignment:
Q  111 gtgagaatctttgatgcaacatattgatttgcagtctcagtgtaatgaattccgtcccagttgatatactcagaactatcattacaaccttttgctgtaa 210  Q
    |||||||| | |||||||||||||||||||| || ||||||||||||| | ||||||||| | | |||| ||   |||||||| ||||||||||||||||    
T  36635208 gtgagaatttgtgatgcaacatattgatttgaagcctcagtgtaatgagtcccgtcccagcttacatacacaccgctatcattgcaaccttttgctgtaa 36635109  T
Q  211 ttgtggttccattgaaggtctttg-tgtt--cccacaagtgactctactgtcatagttcaatggtggacctccatatccacaacatgccataataggttg 307  Q
    ||||||| ||||| ||| || ||| ||||   |||||||  || | |||||||||||| ||||| ||||||||||||||||| || ||||||| ||||||    
T  36635108 ttgtggtcccattcaagatcgttgttgttagtccacaagaaacgcgactgtcatagttaaatggcggacctccatatccacagcaagccataaaaggttg 36635009  T
Q  308 ttcaaaccctgcaaa 322  Q
    |||||||||||||||    
T  36635008 ttcaaaccctgcaaa 36634994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 623 - 705
Target Start/End: Complemental strand, 36639596 - 36639514
Alignment:
Q  623 tagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaatttact 705  Q
    |||||||||||||||| | |||||||||| ||||||||||||||||| ||||||  ||||||||| || ||||||||||||||    
T  36639596 tagtttgcaatgaggtctaattttatggtaaagatatcaacatatgtaacatttacatctggatactggccctgcaatttact 36639514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 702
Target Start/End: Complemental strand, 36634833 - 36634749
Alignment:
Q  618 ttgaatagtttgcaatgaggtttgattttatggtgaagatatcaacatatgtgacatttgaatctggatattgaccctgcaattt 702  Q
    |||| ||||||||||||||||   |||||||||| ||||||||||||||||| ||||||  |||| |||| || |||||||||||    
T  36634833 ttgagtagtttgcaatgaggtccaattttatggtaaagatatcaacatatgtaacatttagatctagatactggccctgcaattt 36634749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 36639826 - 36639699
Alignment:
Q  185 actatcattacaaccttttgctgtaattgtggttccattgaaggtctttgtgttcccacaagtgactctactgtcatagttcaatggtggacctccatat 284  Q
    ||||| ||| |||||||| ||||||| | |||| ||||| |||  |||||| |  ||||||   || | |||||||||||||||||| || |||||||||    
T  36639826 actattattgcaacctttggctgtaactatggtgccatttaagacctttgtttctccacaaaaaacgcgactgtcatagttcaatggcgggcctccatat 36639727  T
Q  285 ccacaacatgccataataggttgttcaa 312  Q
    |||||||| |||||||| || |||||||    
T  36639726 ccacaacaagccataatcggctgttcaa 36639699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 378 - 462
Target Start/End: Original strand, 16979579 - 16979663
Alignment:
Q  378 aagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaag 462  Q
    ||||||||||||||||| |||| |  |||||||||| ||||   |||||||||||||||| |||  |||| ||||||||||||||    
T  16979579 aagagtttaattttgatacactgtcagtgtaaaaagatttacactgtcaacaaatcacaaccaacaatatatgtgactttagaag 16979663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 485
Target Start/End: Original strand, 420501 - 420560
Alignment:
Q  426 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 485  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  420501 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 420560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 974546 - 974465
Alignment:
Q  404 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 485  Q
    |||||||||||||||   | | ||||||  |||||||||||||||||||| ||| |||| | ||||| ||||||||||||||    
T  974546 gtgtaaaaagttttacactctgaacaaagtacaatcaatcatatgtgtgatttttgaagtagttatggttaaaatcaaatgt 974465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 15954009 - 15954063
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 476  Q
    |||||| |||||| |||||||| ||| |||||||||||||| | |||||||||||    
T  15954009 tgtcaataaatcagaatcaatcgtatttgtgactttagaagtagttatgattaaa 15954063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 374 - 483
Target Start/End: Complemental strand, 35035695 - 35035586
Alignment:
Q  374 tactaagagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 473  Q
    ||||| ||||||||||||||| |||| | ||| |||||| |||||   |||||  ||||||||| ||||||||||||||| |||||||| | ||||||||    
T  35035695 tactatgagtttaattttgatacactgtcggtataaaaaattttacattgtcagtaaatcacaaccaatcatatgtgtgattttagaagtagttatgatt 35035596  T
Q  474 aaaatcaaat 483  Q
    ||||||||||    
T  35035595 aaaatcaaat 35035586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 482
Target Start/End: Original strand, 16230755 - 16230813
Alignment:
Q  424 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    |||||||||||||| ||||||||||| ||| |||||||| | ||||||||||| |||||    
T  16230755 tcaacaaatcacaaccaatcatatgtttgattttagaagtagttatgattaaagtcaaa 16230813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 422 - 471
Target Start/End: Complemental strand, 16252684 - 16252635
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatga 471  Q
    |||||||| ||||||||||||||| ||||||||||||||||  |||||||    
T  16252684 tgtcaacacatcacaatcaatcatgtgtgtgactttagaagtgattatga 16252635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 8012086 - 8012027
Alignment:
Q  423 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    |||||||||||||||||||||||||  ||||||||| ||  | ||||||| |||||||||    
T  8012086 gtcaacaaatcacaatcaatcatatacgtgactttaaaaatagttatgataaaaatcaaa 8012027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 476
Target Start/End: Original strand, 36639753 - 36639799
Alignment:
Q  430 aatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 476  Q
    |||||||  |||||||||||||||||||||||| | |||||||||||    
T  36639753 aatcacatgcaatcatatgtgtgactttagaagtagttatgattaaa 36639799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 424 - 482
Target Start/End: Complemental strand, 26762943 - 26762885
Alignment:
Q  424 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    |||| ||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||    
T  26762943 tcaaaaaatcacaatcaatcatttgtatgactttagaagtaattatgattaaagtcaaa 26762885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 422 - 482
Target Start/End: Original strand, 30011734 - 30011794
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    ||||||||||||| |||||||||||||||||| |||||||| | |||||||| || |||||    
T  30011734 tgtcaacaaatcaaaatcaatcatatgtgtgattttagaagtagttatgattgaagtcaaa 30011794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 482
Target Start/End: Complemental strand, 26815620 - 26815559
Alignment:
Q  423 gtcaacaaatcacaatcaatcatatgtgt--gactttagaagcaattatgattaaaatcaaa 482  Q
    |||||||||||||||||||||||||||||  ||||||||||  | ||||||| |||||||||    
T  26815620 gtcaacaaatcacaatcaatcatatgtgtgcgactttagaaatagttatgataaaaatcaaa 26815559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 423 - 473
Target Start/End: Complemental strand, 43244904 - 43244854
Alignment:
Q  423 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatt 473  Q
    |||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  43244904 gtcaacaaatcacaatcaataatatgtgtgactttagaagtgattatgatt 43244854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 475
Target Start/End: Complemental strand, 42336469 - 42336425
Alignment:
Q  431 atcacaatcaatcatatgtgtgactttagaagcaattatgattaa 475  Q
    |||||||||||||||||||||||||||||||  ||||||||||||    
T  42336469 atcacaatcaatcatatgtgtgactttagaattaattatgattaa 42336425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 485
Target Start/End: Original strand, 48553065 - 48553124
Alignment:
Q  424 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 485  Q
    |||||||||||||||||||||||  ||||||||||||||   ||||||||||| ||||||||    
T  48553065 tcaacaaatcacaatcaatcata--tgtgactttagaagtttttatgattaaattcaaatgt 48553124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 45161814 - 45161775
Alignment:
Q  380 gagtttaattttgatgcactcttggtgtaaaaagttttat 419  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  45161814 gagtttaattttaatgaactcttggtgtaaaaagttttat 45161775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 472
Target Start/End: Complemental strand, 7928817 - 7928767
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgat 472  Q
    |||||||| ||| || ||||||||||||||||||||||||| | |||||||    
T  7928817 tgtcaacagatcccactcaatcatatgtgtgactttagaagtagttatgat 7928767  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 422 - 460
Target Start/End: Original strand, 33262587 - 33262624
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttaga 460  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33262587 tgtcaacaaa-cacaatcaatcatatgtgtgactttaga 33262624  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 405 - 482
Target Start/End: Complemental strand, 6468768 - 6468691
Alignment:
Q  405 tgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaa 482  Q
    ||||||||||||||   |||||||||||||||| ||  ||||||| |||||||||||| ||||| ||||||| |||||    
T  6468768 tgtaaaaagttttacactgtcaacaaatcacaaccacgcatatgtatgactttagaagtaattaagattaaagtcaaa 6468691  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 6959354 - 6959316
Alignment:
Q  424 tcaacaaatcacaatcaatcatatgtgtgactttagaag 462  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  6959354 tcaacaaatcacaaccaatcatatgtgtgacttaagaag 6959316  T

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Target: scaffold0312 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 426 - 485
Target Start/End: Complemental strand, 10070 - 10011
Alignment:
Q  426 aacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaatgt 485  Q
    |||||| ||||||||||||||||||||| ||| |||| ||||||| ||||| ||||||||    
T  10070 aacaaagcacaatcaatcatatgtgtgatttttgaagtaattatggttaaagtcaaatgt 10011  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 484
Target Start/End: Original strand, 10231798 - 10231903
Alignment:
Q  379 agagtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaat 478  Q
    ||||||||||||||||  | | |  |||||||||||||||   |||| ||| || |||||||||||||||||||| |||||||  | ||||||| ||| |    
T  10231798 agagtttaattttgatatattgtcagtgtaaaaagttttacactgtccacatattacaatcaatcatatgtgtgattttagaaatagttatgataaaagt 10231897  T
Q  479 caaatg 484  Q
    ||||||    
T  10231898 caaatg 10231903  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 26804046 - 26804096
Alignment:
Q  424 tcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgatta 474  Q
    |||||||||||||||||||| ||| | |||||||||||| |||||| ||||    
T  26804046 tcaacaaatcacaatcaatcttatctctgactttagaagtaattataatta 26804096  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 482
Target Start/End: Original strand, 5262383 - 5262484
Alignment:
Q  381 agtttaattttgatgcactcttggtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatca 480  Q
    |||||||||||||| |||| || ||||||||||||||    ||| || || |||||| || |||||||||||| ||| |||| | ||||||| ||| |||    
T  5262383 agtttaattttgatacactgttagtgtaaaaagtttttcactgttaataagtcacaaacattcatatgtgtgagtttcgaagtagttatgatcaaagtca 5262482  T
Q  481 aa 482  Q
    ||    
T  5262483 aa 5262484  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 428 - 469
Target Start/End: Original strand, 9529531 - 9529572
Alignment:
Q  428 caaatcacaatcaatcatatgtgtgactttagaagcaattat 469  Q
    |||||||||| |||||||||||||||||||| ||| ||||||    
T  9529531 caaatcacaaccaatcatatgtgtgactttaaaagtaattat 9529572  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 476
Target Start/End: Complemental strand, 4593955 - 4593883
Alignment:
Q  404 gtgtaaaaagttttatcgtgtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaa 476  Q
    |||||||||||||||  |||||| |||||||||| ||||||||||  | |||||||||| | ||| |||||||    
T  4593955 gtgtaaaaagttttacggtgtcagcaaatcacaaccaatcatatgatttactttagaagtagttaagattaaa 4593883  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 423 - 483
Target Start/End: Complemental strand, 8783050 - 8782990
Alignment:
Q  423 gtcaacaaatcacaatcaatcatatgtgtgactttagaagcaattatgattaaaatcaaat 483  Q
    ||||||||||||||| ||||||||| | ||||||| |||| | ||||||||||| ||||||    
T  8783050 gtcaacaaatcacaaccaatcatatatatgacttttgaagtagttatgattaaagtcaaat 8782990  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 422 - 461
Target Start/End: Original strand, 6893758 - 6893797
Alignment:
Q  422 tgtcaacaaatcacaatcaatcatatgtgtgactttagaa 461  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  6893758 tgtcaacaaattacagtcaatcatatgtgtgactttagaa 6893797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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