View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-2 (Length: 765)
Name: NF0091-INSERTION-2
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-2 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 389; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 353 - 765
Target Start/End: Original strand, 177139 - 177551
Alignment:
| Q |
353 |
tgaagaagaggaagaataacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
452 |
Q |
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| T |
177139 |
tgaagaagaggaagaagaacatatggtagaagttggtcaagccctcacatggtaccaactataatctgtctttgttcatgattgcagtgctttattctag |
177238 |
T |
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| Q |
453 |
gttcttacttatgcttcatttgtgtttgaattttaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
552 |
Q |
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| T |
177239 |
gttcttacttatgcttcatttgtgtttgaattgtaatttgtgctcaaatcataaaaaataaataggattattaccagatcagaataatgaagtcaacaat |
177338 |
T |
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| Q |
553 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
652 |
Q |
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| T |
177339 |
acagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatttgatctgctgcttgctatctcatagttacattc |
177438 |
T |
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| Q |
653 |
tgtacagcattagcagcctatataaacacctttatgcattgattacgcatgaaataatacactattttctcactttataataaggatctaattaaaattt |
752 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
177439 |
tgtacagcattagcagcctatataaacacttgtatgcattgattacacatgaaataatacactattttctcactttataataaggatctaattaaaattt |
177538 |
T |
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| Q |
753 |
gttatgtgcttga |
765 |
Q |
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| T |
177539 |
gttatgtgtttga |
177551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 176817 - 176988
Alignment:
| Q |
52 |
atgaagtgaaaataattgcagatgttgtcgcagttggatgaatcattagtaccattggttttgattgggatgttaacatcaaaattaagatacacttgag |
151 |
Q |
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| T |
176817 |
atgaagtgaaaataattgcagatgttgtcgtagttggatgaatcattagtaccattggttttgattgggatgttaacatcaaaattacgatacacttgag |
176916 |
T |
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| Q |
152 |
gatttttacttttcttcattgtccactagcgctattcttctccattttcaaaaataataccccggttggttc |
223 |
Q |
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| T |
176917 |
gatttttacttttcttcattgtccactagtgctattcttctacattttcaaaaataataccctggttggttc |
176988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 177083 - 177143
Alignment:
| Q |
265 |
gagttgagagattggagaagagaaccgaaagagttacaattagcaatgccaatctttgaag |
325 |
Q |
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| T |
177083 |
gagttgagagattggagaagagaactgaaagagttacgattagcaatgccaatctttgaag |
177143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 636
Target Start/End: Complemental strand, 22295156 - 22295042
Alignment:
| Q |
520 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
619 |
Q |
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| T |
22295156 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
22295059 |
T |
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| Q |
620 |
tgatctgctgcttgcta |
636 |
Q |
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| T |
22295058 |
tgatatgctgtttgcta |
22295042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 520 - 636
Target Start/End: Original strand, 13646032 - 13646146
Alignment:
| Q |
520 |
ttattaccagatcagaataatgaagtcaacaatacagttgactgatttagcttagagtacaagttacccttaataagcatagcttagtgtagtttacatt |
619 |
Q |
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| T |
13646032 |
ttattaccagatcacaataatcaagtcaacaattcagttgactga-atagcttagcatacaagttactcttattaa-catagcttagcttagtttacttt |
13646129 |
T |
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| Q |
620 |
tgatctgctgcttgcta |
636 |
Q |
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|||| |||||||||||| |
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| T |
13646130 |
tgatatgctgcttgcta |
13646146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 538 - 583
Target Start/End: Complemental strand, 34695179 - 34695134
Alignment:
| Q |
538 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
583 |
Q |
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| T |
34695179 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34695134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 538 - 583
Target Start/End: Complemental strand, 34717591 - 34717546
Alignment:
| Q |
538 |
aatgaagtcaacaatacagttgactgatttagcttagagtacaagt |
583 |
Q |
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| T |
34717591 |
aatgaagtcaacaatacagttgactgagttagcttacagtacaagt |
34717546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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