View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-3 (Length: 630)
Name: NF0091-INSERTION-3
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-3 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 250 - 617
Target Start/End: Original strand, 46512599 - 46512965
Alignment:
| Q |
250 |
gccggtcttagttgacatgtgaagaaaattgcttttctgacatgaacgttactttctaggccccctatatctctacaggccccccaaaattacgatatta |
349 |
Q |
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| T |
46512599 |
gccggtcttagttgacatgtgaagaaaattgcttttctgacatgaacgttactttttaggccccctatatctctacaggccccccaaaattacgatatta |
46512698 |
T |
|
| Q |
350 |
accttttttaaggatacaatatataaataccgaacagtccggtaggtacacataccggaggaacatatttcccatttacaaaccaaacacttctgttatt |
449 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46512699 |
accttttttaaggatacagtatataaataccgaacagtccggtaggtacacataccggaggaacatatttcccatttacaaaccaaacacttcttttatt |
46512798 |
T |
|
| Q |
450 |
ttaaggtaagtgagcatcttgccgtctctttctcttacgaggttgttcttcaacatttttgctccatgtgttgcagtgtcaatctcaaagataagtaagc |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| |
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| T |
46512799 |
ttaaggtaagtgagcatcttgccgtctctttctcttacgaggtcgttcttcgacattttt-ctccgtgtgttgtagtgtcaatctcaaagataagtaagc |
46512897 |
T |
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| Q |
550 |
atcaatcacgcttcttacaacaaactcacacacgttcttctttctcttatttcctccaggccgagaat |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46512898 |
atcaatcacgcttcttacaacaaactcacacacgttcttctttctcttatttcctccaggccgagaat |
46512965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 46512398 - 46512566
Alignment:
| Q |
8 |
gtagggaagaccgccaacgtaaatggagctatcatcgtccagtgtcattttgtggaactgattttacttcaacttttctgctatgcttcaagctttcaac |
107 |
Q |
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| T |
46512398 |
gtagggaagaccgccaacgtaaatggagctatcatcgtccagtgtcattttgtggaactgattttacttcaacttttctgctatgcttcaagctttcaac |
46512497 |
T |
|
| Q |
108 |
ttcgtttcttgaccatagtctttctccttcactctttttctcttgcaaattgatattttacttcactcga |
177 |
Q |
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| T |
46512498 |
ttcgtttcttgaccatagtctttctccttcactctttttctcttgcaaattgata-tttacttcactcga |
46512566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 310 - 565
Target Start/End: Complemental strand, 19816699 - 19816448
Alignment:
| Q |
310 |
ccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatacaatatataaataccgaacagtccggtaggtacacataccggag |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| |||||||| |
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| T |
19816699 |
ccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatgcggtatataaataccgaacagtccgataggtaca--taccggag |
19816602 |
T |
|
| Q |
410 |
gaacatatttcccatttacaaaccaaacacttctgttattttaaggtaagtgagcatcttgccgtctctttctcttacgaggttgttcttcaacattttt |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
19816601 |
gaacatatttcccatttacaaaccaaacacttcttttattttaaggtaagtgagcatcttgccgtctctttctcttac--ggtcgttctttgacattttt |
19816504 |
T |
|
| Q |
510 |
gctccatgtgttgcagtgtcaatctcaaagataagtaagcatcaatcacgcttctt |
565 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19816503 |
tcttcatgtgttgcagtgtcaatctcaaagataagtaagcatcaatgacgcttctt |
19816448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 297 - 568
Target Start/End: Complemental strand, 8208603 - 8208336
Alignment:
| Q |
297 |
gttactttctaggccccc--tatatctctacaggccccccaaaattacgatattaaccttttttaaggatacaatatataaataccgaacagtccggtag |
394 |
Q |
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|||||||| ||||||||| |||||||||||||| ||| ||||||||||||||| |||||||||| | || |||||||||||||||||||| | || | |
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| T |
8208603 |
gttactttttaggccccccttatatctctacaggtcccacaaaattacgatattgaccttttttatgcgaactatatataaataccgaacagttcagtgg |
8208504 |
T |
|
| Q |
395 |
gtacacataccggaggaacatatttcccatttacaaaccaaacacttctgttattttaaggtaa--gtgagcatcttgccgtctctttctcttacgaggt |
492 |
Q |
| |
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||||| ||| |||||| ||| || | |||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
8208503 |
gtaca--tactggaggatcattttctacgtttacaaaccaaacacttcttttattttaaggtaaaggtgagcatcttgtcgtctctttctcttacgaggt |
8208406 |
T |
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| Q |
493 |
tgttcttcaacatttttgctccatgtgttgcagtgtcaatctcaaagataagtaagcatcaatcacgcttcttaca |
568 |
Q |
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||||||| ||||||||||| | |||||||||| ||||||||||| || |||||||||||| ||||||||| |
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| T |
8208405 |
cgttcttcgacatttttgcttcgtgtgttgcag------tctcaaagataggtcagcatcaatcacacttcttaca |
8208336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 545 - 617
Target Start/End: Complemental strand, 19816429 - 19816357
Alignment:
| Q |
545 |
taagcatcaatcacgcttcttacaacaaactcacacacgttcttctttctcttatttcctccaggccgagaat |
617 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19816429 |
taagcatcactcacgcttctcacaacaaactcactcacgttcttctttctcttatttcctccaggccgagaat |
19816357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 310 - 467
Target Start/End: Complemental strand, 1204087 - 1203932
Alignment:
| Q |
310 |
ccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatacaatatataaataccgaacagtccggtaggtacacataccggag |
409 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
1204087 |
ccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatgcggtatataaataccaaacagtccggtaggt--acataccggag |
1203990 |
T |
|
| Q |
410 |
gaacatatttcccatttacaaaccaaacacttctgttattttaaggtaagtgagcatc |
467 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |
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| T |
1203989 |
gaacatatttcccatttacaaaccaaacacttctttcattttaaggtaagtcagcatc |
1203932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 541 - 617
Target Start/End: Complemental strand, 1203943 - 1203867
Alignment:
| Q |
541 |
taagtaagcatcaatcacgcttcttacaacaaactcacacacgttcttctttctcttatttcctccaggccgagaat |
617 |
Q |
| |
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||||| ||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1203943 |
taagtcagcatcactcacacttctcacaacaaactcactcacgttcttctttctcttatttcctccaggccgagaat |
1203867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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