View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-4 (Length: 708)
Name: NF0091-INSERTION-4
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-4 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 485 - 640
Target Start/End: Original strand, 12636908 - 12637063
Alignment:
| Q |
485 |
gagcatttgggttgttctaaatttttggtttggaatattggtttgtgaaaatgggtttttggagaaatgttcaagtttgattttggtgttgttttcatgt |
584 |
Q |
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| T |
12636908 |
gagcatttgggttgttctaaatttttggtttggaatattgttttgtgaaaatgggtttttggagaaatgttcaagtttgattttggtgttgtttttatgt |
12637007 |
T |
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| Q |
585 |
gaagatcttagggataggtgtttgaagattttactgtgtagggttggtggttctgt |
640 |
Q |
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| T |
12637008 |
gaagatcttagggataggtgtttgaagattttactgtgtagggttggtggttctgt |
12637063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 271 - 417
Target Start/End: Original strand, 12636693 - 12636839
Alignment:
| Q |
271 |
ctgaattatggtttattcatttctcatcatactcttcttgaattcattctgagaaaaagttccaatctttgcttctgggtttctcagattttcatcagat |
370 |
Q |
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| T |
12636693 |
ctgaattatggtttattcatttctcatcatactcttcttgaattcattctgagaaaaagttccaatctttgcttctgggtttctcagattttcatcagat |
12636792 |
T |
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| Q |
371 |
aagtagcaaagtctgaagaattcttactgtataagccttcaaaggtg |
417 |
Q |
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| T |
12636793 |
aagtagcaaagtttgaagaattcttactgtataagccttgaaaggtg |
12636839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 12636422 - 12636611
Alignment:
| Q |
8 |
aatccatatcatctcatagatcatatt-gagtgttatatcctcttggcccccacaacatagtttttatacatcgaatcatttaaggttctttccctttgt |
106 |
Q |
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| T |
12636422 |
aatccatatcatctcacagatcatatttgagtattatatcctcttggcccccacaacatagtttttatacatcgaatcatttaaggttctttccctttgt |
12636521 |
T |
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| Q |
107 |
cacatttgaatatttgattattaattatatcctttagaataa--------aatacagtatagttgaaaaattaacttgcacaccayaaacc |
189 |
Q |
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| T |
12636522 |
cacatttgaatatttgattatt-attatatcctttagaataaaatacactaatacagtatagttgaaaaattaacttgcacaccacaaacc |
12636611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 567
Target Start/End: Original strand, 12637095 - 12637154
Alignment:
| Q |
508 |
tttggtttggaatattggtttgtgaaaatgggtttttggagaaatgttcaagtttgattt |
567 |
Q |
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| T |
12637095 |
tttggattggaatattggtttgtgatattggattttaggagaaaggttcaaatttgattt |
12637154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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