View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-5 (Length: 640)
Name: NF0091-INSERTION-5
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-5 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Complemental strand, 46773946 - 46773513
Alignment:
| Q |
8 |
attatagcagtattatccagaataatcttatttttcatgcaccatcatttttccatttccattcccacatgtatatcctttctctgtgtttcttgtgtat |
107 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46773946 |
attatagcagtattatcctgaataatcttatttttcatgcaccatcatttttccatttccattcccacatgtatatcctttctctgcgtttcttgtgtat |
46773847 |
T |
|
| Q |
108 |
aatatatctagtgcataatgtgatataggctagaccaggtcataagcnnnnnnngcatagtata-gtccagcttgtctacatgtagtttatagtatcatt |
206 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46773846 |
aatatatctagtgcagaatgtgatataggctagaccaggtcataagctttttttgcatagtatatgtccagcttgtctacatgtagtttatagtatcatt |
46773747 |
T |
|
| Q |
207 |
tagcactctctattgaatgttttatgaagatttgttgcccaaatgtgcgattgttcttgggtctatgtgatgattattgtgcattagtctttcatgtggc |
306 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46773746 |
tagcactctctattgaatgttttatgaagatttgttgcccaaatgtgcgattgttcttgggtctatgtgatgattattgtgcattagtctttcatgtggc |
46773647 |
T |
|
| Q |
307 |
ccaacaaaaatcacttctattcaaaatatcaatgactcaaattcaaatctaattaaaaaccacttcaatgtaattgaaatgtgattagcttgctaatagg |
406 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46773646 |
ccaacaaaaatcacttctatttaaaatatcaatgactcaaattcaaatctaattaaaaaccacttcaatgtaattgaaatgtgattagcttgctaatagg |
46773547 |
T |
|
| Q |
407 |
tcaacttcgtcaatccaaaataatgctgacgctg |
440 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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| T |
46773546 |
tcaactttgtcaatccaaaataatgctgacgctg |
46773513 |
T |
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