View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091-INSERTION-7 (Length: 665)
Name: NF0091-INSERTION-7
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091-INSERTION-7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 8 - 665
Target Start/End: Original strand, 44908318 - 44908972
Alignment:
| Q |
8 |
ggttattggtctgctgctgtatgaagagatcaagtgggataccatgtttaaggatctaaagccaaactaaannnnnnnctcggatttggatcctctccaa |
107 |
Q |
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| T |
44908318 |
ggttattggtctgctgctgt-tgaagagatcaagtgggataccatgtttaaggatctaaagccaaactaaatttttttctcggatttggatcctctcc-- |
44908414 |
T |
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| Q |
108 |
tttcaaatactctctatctcgatcctctaaggctgcaacatgatagtgcagccgtagaggatccaattttctctacatcctcctgtagagggtctaggtt |
207 |
Q |
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| T |
44908415 |
tttcaaatactctctatctcgatcctctaaggctgcaacacgatagtgcagccgtagaggatccaattttctctacatcctcctgtagagggtctaggtt |
44908514 |
T |
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| Q |
208 |
caacaaatgtcctttaatttaattacatgtttaagtattgaggtagatacttagttttgtagcgagaagtatataatttgagttgagtttgaggctgctt |
307 |
Q |
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| T |
44908515 |
caacaaatgtcctttaatttaattacatgtttaagtattgaggtagatacttagttttgtagcaaaaagtatataatttgagttgagtttgagtctgctt |
44908614 |
T |
|
| Q |
308 |
gacttgagtttatgcattgtatactatgtcttatgtggtgacagtacatatttacacagtatatttgatgttatcttggtgtttatgtcactgaataatt |
407 |
Q |
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| T |
44908615 |
gacttgagtttatgcattgtatactatgtcttatgtggtgacagtacatatttacacagtatatttgatgttatcttggtgtttatgtcactgaataatt |
44908714 |
T |
|
| Q |
408 |
gagcctttttctattaatcatcaaattattatgtttactactttacttcatttagctagaaagacccttgggaaacaacaactttcataccatagaacaa |
507 |
Q |
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| T |
44908715 |
gagcctttttctattaatcatcaaattattatgtttactactttacttcatttagctagaaagacccttgggaaacaacaactttcataccatagaacaa |
44908814 |
T |
|
| Q |
508 |
agtaatcaatctcggtcattgattcgcaatcagacggttcagatcacttcacttaatctattttaaacgatctagaccattgatttaaatcggacagtcg |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44908815 |
agtaatcaatctcggtcattgattcgcaatcagacggttcagatcacttcacttaatctattttaaacgatctagaccattgatttaaatcggacagtcg |
44908914 |
T |
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| Q |
608 |
atgttagtaactatgtcatacaattacttattgtagggaatctatttctcaattcgat |
665 |
Q |
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| T |
44908915 |
atgttagtaactgtgtcatacaattacttattgtagggaatctatttctcaattcgat |
44908972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 2051262 - 2051193
Alignment:
| Q |
8 |
ggttattggtctgctgctgtatgaagagatcaagtgggataccatgtttaaggatctaaagccaaactaaa |
78 |
Q |
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||||||||||| |||||||| |||||| |||| ||||||||| ||||| | ||||||||||||||||||| |
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| T |
2051262 |
ggttattggtcagctgctgt-tgaagatatcaggtgggatactatgttccaagatctaaagccaaactaaa |
2051193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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