View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0091_high_11 (Length: 243)
Name: NF0091_high_11
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 30409738 - 30409818
Alignment:
| Q |
1 |
acaagttttgttaacaagacctaagtaggatcaaattgataagttttaaagttaagggagccaaagaagtattcaggtctt |
81 |
Q |
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| T |
30409738 |
acaagttttgttaacaagacccaagtaggatcaaattgataagttttaaagttaagggaaccaaaaaagtatttaggtctt |
30409818 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 30409922 - 30409974
Alignment:
| Q |
186 |
tttctttaattattggtcctctaaacactctaatatcaattttagtctctgct |
238 |
Q |
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| T |
30409922 |
tttctttaattattggtcctctaaacactctaatatcaattttagtctctgct |
30409974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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