View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0091_high_13 (Length: 228)
Name: NF0091_high_13
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091_high_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 8156290 - 8156135
Alignment:
| Q |
1 |
tactctagcaacaaatgatttagggagaaattgagagagaaaagagttagattgaatggattgtaattctatattctcattagtgaatgaaactatgaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8156290 |
tactctagcaacaaatgatttagggagaaattgagaga--aaagagttagattgaatggattgtaattctatattctcattagtgaatgaaactatgaaa |
8156193 |
T |
|
| Q |
101 |
aagaacattaaaatcatttatacaagaatgatgatccaaaaccacaaataggcaaatg |
158 |
Q |
| |
|
| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8156192 |
atgaacattacaatcatttatacaagaatgatgatccaaaaccacaaatagccaaatg |
8156135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 8156114 - 8156071
Alignment:
| Q |
185 |
gtataaacacggtcaaataactctggcgcccaattagactctcc |
228 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8156114 |
gtataaacacggtcaaataactctggcagccaattagactctcc |
8156071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 11399278 - 11399200
Alignment:
| Q |
14 |
aatgatttagggagaaattgagagagaaaagagttagattgaatggattgtaattctatattctcattagtgaatgaaa |
92 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
11399278 |
aatgatttatagagaaattgagagagaaaagagatagatacaaatgattgtaattctatattctcagtagtgaatgaaa |
11399200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 36614047 - 36614006
Alignment:
| Q |
34 |
agagagaaaagagttagattgaatggattgtaattctatatt |
75 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
36614047 |
agagagaaaagagatagatgcaatggattgtaattctatatt |
36614006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 30915355 - 30915288
Alignment:
| Q |
25 |
gagaaattgagagagaaaagagttagattgaatggattgtaattctatattctcattagtgaatgaaa |
92 |
Q |
| |
|
|||||||||||||||| ||||| || || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30915355 |
gagaaattgagagagataagagatatatgcaatagattgtaattctatattctcattagtgaatgaaa |
30915288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 30904542 - 30904475
Alignment:
| Q |
25 |
gagaaattgagagagaaaagagttagattgaatggattgtaattctatattctcattagtgaatgaaa |
92 |
Q |
| |
|
|||||||||||||||| ||||| || || ||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
30904542 |
gagaaattgagagagagaagagatatatgcaatagattgtaattctatattctcattaatgaatgaaa |
30904475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1527 times since January 2019
Visitors: 1302