View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0091_high_4 (Length: 314)
Name: NF0091_high_4
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 44 - 301
Target Start/End: Original strand, 22726920 - 22727171
Alignment:
| Q |
44 |
tgtgagagtaatgaatcatagggtacgtatagtgtccagtggaacaaagtgcatgccatgaatatacacaatcagcataataaagatagaaatcacaata |
143 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22726920 |
tgtgagagtaatgaatcatagggtatgtatagtgt--agtggaacaaagtgcaggccgtgaatatacacaatcagcataataaaaatagaaatcacaata |
22727017 |
T |
|
| Q |
144 |
tctacaattatatatgtacctatcattagccagattccaagcttcttgcctcaattctggacgtgtttcaagggtggcaagttaatttgaaataaacttg |
243 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22727018 |
tctacaattacata----cctatcattagccagattccaagcttcttgcctcaattctggaggagtttcaagggtggcaaggtaatttgaaataaacttg |
22727113 |
T |
|
| Q |
244 |
tgaggatgttcaacatgacaaataaatcccatttctttcaaaatatgtctccctgttc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22727114 |
tgaggatgttcaacatgacaaataaatcccatttctttcaaaatatgtctctctgttc |
22727171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 2645541 - 2645403
Alignment:
| Q |
156 |
tatgtacctatcattagccagattccaagcttcttgcctcaattctggacgtgtttcaagggtggcaagttaatttgaaataaacttgtgaggatgttca |
255 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
2645541 |
tatgtacctatcgttagccagattccaagcttcttgactcaactctggaggtgtttcaagggtagcaaggtaattcgaaataaacttgtgaggatgttca |
2645442 |
T |
|
| Q |
256 |
acatgacaaataaatcccatttctttcaaaatatgtctc |
294 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2645441 |
acatgacaaatgaatcccatttctttcaaaatatgtctc |
2645403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 8877614 - 8877570
Alignment:
| Q |
30 |
tatacagggaggaatgtgagagtaatgaatcatagggtacgtata |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8877614 |
tatacagggaggaatgtgagagtaatgaatcatagggtacgtata |
8877570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1061 times since January 2019
Visitors: 1289