View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0091_low_1 (Length: 1817)

Name: NF0091_low_1
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0091_low_1
NF0091_low_1
[»] chr6 (15 HSPs)
chr6 (682-1720)||(28153427-28154467)
chr6 (1-469)||(28154464-28154935)
chr6 (452-680)||(28246027-28246255)
chr6 (452-680)||(28328269-28328497)
chr6 (452-680)||(28505905-28506133)
chr6 (452-678)||(28239048-28239274)
chr6 (452-680)||(28524905-28525133)
chr6 (452-614)||(28191138-28191300)
chr6 (851-941)||(28178237-28178327)
chr6 (426-496)||(28192456-28192525)
chr6 (867-941)||(28224299-28224373)
chr6 (476-635)||(28142352-28142511)
chr6 (1317-1453)||(28141461-28141597)
chr6 (853-941)||(29828442-29828530)
chr6 (569-640)||(28095794-28095865)
[»] scaffold0038 (3 HSPs)
scaffold0038 (452-680)||(46189-46417)
scaffold0038 (452-678)||(39210-39436)
scaffold0038 (867-941)||(24797-24871)
[»] scaffold0019 (2 HSPs)
scaffold0019 (452-662)||(55513-55723)
scaffold0019 (1065-1143)||(56151-56229)
[»] chr5 (1 HSPs)
chr5 (476-620)||(16693892-16694036)
[»] chr4 (1 HSPs)
chr4 (469-600)||(5088325-5088456)
[»] chr2 (1 HSPs)
chr2 (569-640)||(3282422-3282493)
[»] chr8 (1 HSPs)
chr8 (557-632)||(16352164-16352239)


Alignment Details
Target: chr6 (Bit Score: 889; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 682 - 1720
Target Start/End: Complemental strand, 28154467 - 28153427
Alignment:
Q  682 tttgagcagaagttgtcgtacatttgtagacaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 781  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154467 tttgagccgaagttgtcgtacatttgtagtcaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 28154368  T
Q  782 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 881  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154367 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 28154268  T
Q  882 cttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaa 981  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154267 cttctattgaagttcccaccaaaacaagtgataagatattttccatctctcctaatatttgagactagaacaacatgagagatccagttgataaagaaaa 28154168  T
Q  982 gttaacttcatcggttggaaactcctaagcttgcagcaaccttcagcaattaggacttgaagtttatttaggcaaatagaatggtgaattgtaattaaat 1081  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28154167 gttaacttcatcggttggaaactcctaagcttgcagcaaccttcagcaactaggacttgaagtttatttaggcaaacagaatggtgaattgtaattaaat 28154068  T
Q  1082 ttatacattttttaattgaaaatatttctaaattttggagaccagatatgtcaagtatccgttttagacttccac-gtagtctaaatttaactctttcat 1180  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28154067 ttatacattttttaattgaaaatatttctaaatttcggagaccagatatgtcaagtatccgttttagacttccacagtagtctaaatttaactctttcat 28153968  T
Q  1181 atctatgaacctctgcaaaaaggnnnnnnnnntgaataacctaaaagcgacgcattgacatacaagatgatacaaacagaactattactcaaaccttcaa 1280  Q
    |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28153967 atctatgaacctctgcaaaaagg-aaaaaaaatgaataacctaaaagcgacgcattgacatacaagatgatataaacagaactattactcaaaccttcaa 28153869  T
Q  1281 tgaggaaggtgactcaaatgatttaagcaaacttcctgtgaaggatatctgtgccattctagaaatctcaaattatttggaagatgtccgggacctttgg 1380  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28153868 tgaggaaggtgactcaaatgatttaagcaaacttcatgtgaaggatatctatgccattctagaaatctcaaattatttggaagatgtccgggatctttgg 28153769  T
Q  1381 gaaagaagccacttttaatgatcaaagttttgaggttttttgtcttcttgaacgcatctcctttccatgctacttttacgtctccaacttctaatgacag 1480  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  28153768 gaaagaagccacttttaatgatcaaagttttgaggttttttgttttcttgaacgcatctcctttccatgctacttttacgtctccaacatccaatgacag 28153669  T
Q  1481 gtaatccatacatataatttcaattctacttgttcccttgaagcacacac--nnnnnnnnnncacaaatcagaagaaatctatcactaagtaatcaaaag 1578  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||    
T  28153668 gtaatccatacatataatttcaattctgcttgttcccttgaagcacacacaaaaaaaaaaaacacaaatcagaagaaatctatcactaagtaatcaaaag 28153569  T
Q  1579 agataaatcaaggataaagaaacagttttctatgcatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaagacgactattaggtaactt 1678  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28153568 agataaatcaaggataaagaaacagttttctatgaatcggggaagtattgtgaaatcattcagtcaattcagatgacgtaggacgactattaggtaactt 28153469  T
Q  1679 ggacatggcgagtttcttaggacaataattagttcgtatgta 1720  Q
    ||| |||| |||||||||||||||||||||||||||||||||    
T  28153468 ggatatggtgagtttcttaggacaataattagttcgtatgta 28153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 28154935 - 28154464
Alignment:
Q  1 ttccaaaatctgtaaagagtgttgttatcatctaagacctgcatgtaatctctacatggatccattcatttttcagaagtgcattgtgcagtatagaatt 100  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154935 ttccaaaatctgtaacgagtgttgtcatcatcaaagacctgcatgtaatctctacatggatccattcatttttcagaagtgcattgtgcagtatagaatt 28154836  T
Q  101 gaaccgcatatcctctagttgaagatcgtatagatatgtattattcggttctacc--------------atgtccaagaccactttgacagtcatagtct 186  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  28154835 gaaccgcatatcctccagttgaagatcgtatagatacgtattattcggttctaccccgatattactaccatgtccaagaccactttgacagtcatagtct 28154736  T
Q  187 ttgatgaacagattgggtcttaatgaatgaaattcactgagggagtaccagaattaaattcattgtcccgtgctttggtgctcaaaccactccagaatcc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||            |||||||||||||||||||||||    
T  28154735 ttgatgaacagattgggtcttaatgaatgaaattcactgagggagtaccagaattaaatacattg------------gtgctcaaaccactccagaatcc 28154648  T
Q  287 ttgcagatcctgccatacgaatgttcgtatttccagatatatgcagctcctgttagtcataaataatttataagattaccaacataaattacaatatgct 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154647 ttgcagatcctgccatacgaatgttcgtatttccagatatatgcagctcctgttagtcataaataatttataagattaccaacataaattacaatatgct 28154548  T
Q  387 atgaaatgtaaaatgaaatttttaagcaag-nnnnnnnnncttatttagtagcattctcctgcaaagaggaagtcaatgatttg 469  Q
    |||||||||||||||||||||||||||| |          ||||||||||||||||||||||||||||||||||||||||||||    
T  28154547 atgaaatgtaaaatgaaatttttaagcatgaaaataaaaacttatttagtagcattctcctgcaaagaggaagtcaatgatttg 28154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 2e-44
Query Start/End: Original strand, 452 - 680
Target Start/End: Complemental strand, 28246255 - 28246027
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28246255 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 28246156  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  28246155 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 28246056  T
Q  652 tgcaagaaattcttatgacaagctgcatt 680  Q
    || ||||||||| | ||||||| ||||||    
T  28246055 tggaagaaattcatctgacaagttgcatt 28246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 2e-44
Query Start/End: Original strand, 452 - 680
Target Start/End: Complemental strand, 28328497 - 28328269
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28328497 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28328398  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28328397 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28328298  T
Q  652 tgcaagaaattcttatgacaagctgcatt 680  Q
    || ||||||||| | ||||||| ||||||    
T  28328297 tggaagaaattcatctgacaagttgcatt 28328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 2e-44
Query Start/End: Original strand, 452 - 680
Target Start/End: Complemental strand, 28506133 - 28505905
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28506133 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28506034  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28506033 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28505934  T
Q  652 tgcaagaaattcttatgacaagctgcatt 680  Q
    || ||||||||| | ||||||| ||||||    
T  28505933 tggaagaaattcatctgacaagttgcatt 28505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 9e-34
Query Start/End: Original strand, 452 - 678
Target Start/End: Complemental strand, 28239274 - 28239048
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  28239274 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 28239175  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  28239174 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 28239075  T
Q  652 tgcaagaaattcttatgacaagctgca 678  Q
    || ||||||||| | ||||||| ||||    
T  28239074 tggaagaaattcatctgacaagatgca 28239048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 452 - 680
Target Start/End: Complemental strand, 28525133 - 28524905
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    ||||||||||| ||||||||||||| ||||||||| | |  ||||||||| || | |||||||||||||| ||| || ||||| ||||||||   |||      
T  28525133 gaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaatttctctaaggcacttgcaatcatccaatataagag 28525034  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
       ||||||| ||| | ||||||||||||||||||||||| ||||||||| | | |||||||| |||   || |||||||| | ||||||||| ||| ||    
T  28525033 catataaaaactgaaaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaatattttcacattagcagaccacatgacaagtat 28524934  T
Q  652 tgcaagaaattcttatgacaagctgcatt 680  Q
    || |||||| || | ||||||| ||||||    
T  28524933 tggaagaaaatcatctgacaagttgcatt 28524905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 452 - 614
Target Start/End: Complemental strand, 28191300 - 28191138
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||  |  ||||||||| | | |||||||| |||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28191300 gaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaaggcacttgcaatcatccaatataagat 28191201  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggt 614  Q
     | |||||| |||||| ||||||||||||||||||||||| ||||||||| | | ||||||||    
T  28191200 ccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggt 28191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 851 - 941
Target Start/End: Complemental strand, 28178327 - 28178237
Alignment:
Q  851 ccagtgagatttcgaaatgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 941  Q
    ||||||| ||||  ||||||||||  |||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||||| ||||    
T  28178327 ccagtgatatttttaaatgaaaatcacaactcttctatggaagttcccaccagaacaactgatgatatattttccatgtctcctaacattt 28178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 426 - 496
Target Start/End: Original strand, 28192456 - 28192525
Alignment:
Q  426 cttatttagtagcattctcctgcaaagaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaa 496  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  28192456 cttatttagtagcatgctcctgcaa-gaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaa 28192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 867 - 941
Target Start/End: Complemental strand, 28224373 - 28224299
Alignment:
Q  867 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 941  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  28224373 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 28224299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 476 - 635
Target Start/End: Complemental strand, 28142511 - 28142352
Alignment:
Q  476 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacagtctttga 575  Q
    |||||||||| ||||||||||||||| |||| ||| ||||||||| ||||| | || || | |||||| | ||| | |  ||||||||  || |||||||    
T  28142511 aatgcagacacatgttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgtaaaaagttgcattctttga 28142412  T
Q  576 tgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaa 635  Q
     |||||| ||||| || || |||||||||| |||||||  ||||| || |||||||||||    
T  28142411 ggcattccggaaggattgtaaaattactccctgataggactaaatctttcacattagtaa 28142352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1317 - 1453
Target Start/End: Complemental strand, 28141597 - 28141461
Alignment:
Q  1317 tgtgaaggatatctgtgccattctagaaatctcaaattatttggaagatgtccgggacctttgggaaagaagccacttttaatgatcaaagttttgaggt 1416  Q
    ||||||||||| ||  ||||||| || | ||| |||||||||||||||||  |  ||||||||| ||||   || |||||||| || |||||||||||||    
T  28141597 tgtgaaggataactacgccattccagtactcttaaattatttggaagatgctcaagacctttggaaaagcgacctcttttaataataaaagttttgaggt 28141498  T
Q  1417 tttttgtcttcttgaacgcatctcctttccatgctac 1453  Q
    |||   ||||||| ||  |||||||||||||| ||||    
T  28141497 tttccatcttctttaattcatctcctttccattctac 28141461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 853 - 941
Target Start/End: Complemental strand, 29828530 - 29828442
Alignment:
Q  853 agtgagatttcgaaatgaaaatggcaactcttctattgaagttcccac-caaaacaagtgatgagatattttccatctctcctaatattt 941  Q
    |||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| || | |  ||||| ||||||| |||||||||||    
T  29828530 agtgagattttgaaatgaaaatggcaattcttttatggaagttcccacacaaaacatgtca-gttatattctccatctttcctaatattt 29828442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 569 - 640
Target Start/End: Original strand, 28095794 - 28095865
Alignment:
Q  569 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 640  Q
    |||||||||||||| |||||||| |||| ||||||  |||||| |||||||| |  |||||||| |||||||    
T  28095794 tctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccac 28095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 2e-44; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 2e-44
Query Start/End: Original strand, 452 - 680
Target Start/End: Complemental strand, 46417 - 46189
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  46417 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 46318  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  46317 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 46218  T
Q  652 tgcaagaaattcttatgacaagctgcatt 680  Q
    || ||||||||| | ||||||| ||||||    
T  46217 tggaagaaattcatctgacaagttgcatt 46189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 9e-34
Query Start/End: Original strand, 452 - 678
Target Start/End: Complemental strand, 39436 - 39210
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  39436 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 39337  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  39336 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 39237  T
Q  652 tgcaagaaattcttatgacaagctgca 678  Q
    || ||||||||| | ||||||| ||||    
T  39236 tggaagaaattcatctgacaagatgca 39210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 47; E-Value: 5e-17
Query Start/End: Original strand, 867 - 941
Target Start/End: Complemental strand, 24871 - 24797
Alignment:
Q  867 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 941  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  24871 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 24797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 87; Significance: 6e-41; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 6e-41
Query Start/End: Original strand, 452 - 662
Target Start/End: Original strand, 55513 - 55723
Alignment:
Q  452 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 551  Q
    |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || ||||| |||||||| | |||      
T  55513 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatttaagaa 55612  T
Q  552 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 651  Q
     ||| |||||| |||| ||||| |||||||| |||||||| ||||||||| | | |||||||| ||||  || |||||||| | ||||||||| ||| ||    
T  55613 accacaaaaagcgacaatctttcatgcattccggaagaattgtgaaattatttcctgataggtctaaagttttcacattagcagaccacatgacaagtat 55712  T
Q  652 tgcaagaaatt 662  Q
    || ||||||||    
T  55713 tggaagaaatt 55723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 1065 - 1143
Target Start/End: Original strand, 56151 - 56229
Alignment:
Q  1065 gtgaattgtaattaaatttatacattttttaattgaaaatatttctaaattttggagaccagatatgtcaagtatccgt 1143  Q
    |||||||  |||||||||  |||| ||||||| ||||||||||||||||||| ||||| | || |||||| ||||||||    
T  56151 gtgaatttcaattaaattcttacaatttttaaatgaaaatatttctaaatttgggagatcggagatgtcatgtatccgt 56229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 476 - 620
Target Start/End: Complemental strand, 16694036 - 16693892
Alignment:
Q  476 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccat-aaaaagtgacagtctttg 574  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |||| ||||| ||| ||  || |||||||| || ||||||    
T  16694036 aatgcagacaaacgttttaaatttggaggaatccctctaatttctcgaagacatgtgcagtcattcaaattaag-cgtaatcaaaaagtggcattctttg 16693938  T
Q  575 atgcattctggaagaatagtgaaattactccttgataggtttaaat 620  Q
    ||  |||||||||| || |||||| || |||| ||||||| |||||    
T  16693937 ataaattctggaagtattgtgaaactattcctcgataggtctaaat 16693892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 469 - 600
Target Start/End: Original strand, 5088325 - 5088456
Alignment:
Q  469 gcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacag 568  Q
    ||||| |||||||||||  |  |||| | |||| |||| ||||||||||||| ||||| | ||||| |||| ||| ||||| | ||||| |||| ||||     
T  5088325 gcagcgtaatgcagacatgttctttagagttggaggaatccctctaatttcttgaagagacttgcattcattcaattgaaggctccatagaaagcgacat 5088424  T
Q  569 tctttgatgcattctggaagaatagtgaaatt 600  Q
    ||||||| |||||||||||||||  |||||||    
T  5088425 tctttgaggcattctggaagaattttgaaatt 5088456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000007
Query Start/End: Original strand, 569 - 640
Target Start/End: Complemental strand, 3282493 - 3282422
Alignment:
Q  569 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 640  Q
    |||| |||||||||||||||||| ||||||||| || |||||| || |||||||  ||||||||||||||||    
T  3282493 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccac 3282422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 557 - 632
Target Start/End: Original strand, 16352164 - 16352239
Alignment:
Q  557 aaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattag 632  Q
    |||||||||||||||||||| ||| |  ||||| | ||||||||| || | ||||||||||||| || ||||||||    
T  16352164 aaaaagtgacagtctttgatccatgcatgaagagttgtgaaattattcttcgataggtttaaatctttcacattag 16352239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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