View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0091_low_9 (Length: 281)
Name: NF0091_low_9
Description: NF0091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0091_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 49004927 - 49004676
Alignment:
| Q |
30 |
attacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49004927 |
attacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgc |
49004828 |
T |
|
| Q |
130 |
catttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004827 |
catttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaaagtgaaagatagt |
49004728 |
T |
|
| Q |
230 |
ttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49004727 |
ttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctc |
49004676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 30 - 281
Target Start/End: Complemental strand, 38117124 - 38116874
Alignment:
| Q |
30 |
attacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38117124 |
attacgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgc |
38117025 |
T |
|
| Q |
130 |
catttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38117024 |
catttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt-aagtgaaagatagt |
38116926 |
T |
|
| Q |
230 |
ttaaacattgaatgttcaatggtaacttcataactcacataatcagtttctc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38116925 |
ttaaacattgaatgttcaatggtaacttcattactcacataatcagtttctc |
38116874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 34 - 281
Target Start/End: Complemental strand, 38160946 - 38160699
Alignment:
| Q |
34 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
38160946 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgccatt |
38160847 |
T |
|
| Q |
134 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaa |
233 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
38160846 |
tttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatattaaaagtgaaagatagtttca |
38160747 |
T |
|
| Q |
234 |
acattgaatgttcaatggtaacttcataactcacataatcagtttctc |
281 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38160746 |
gctttgaatgttcaatggtaacttcataactcgcataatcagtttctc |
38160699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1014 times since January 2019
Visitors: 1289