View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0092-INSERTION-1 (Length: 471)
Name: NF0092-INSERTION-1
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0092-INSERTION-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 39703333 - 39703799
Alignment:
| Q |
1 |
acttcaaatttctcttcatcagcgttaggtataaacaattcttcggcatcaaatcctagaatatatttggatctaaatcatcgtcaagggctaacagcca |
100 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
39703333 |
acttcaaatttctcttcatcagcattaggtataa-caattcttctgcatcaaatcctagaatatatttggatctaaatcatcgtcaagggccaacaacca |
39703431 |
T |
|
| Q |
101 |
tttacttgctcatgtattgcttcaattattttagcctcaaatttagtttctaaatgcacctggcaatgatagttaagaaatgaagtacataaaaacttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39703432 |
tttacttgctcatgtattgcttcaattattttagcctcaaatttagtttctaaatgcacctggcaatgatagtta-gaaatgaagtacataaaaacttca |
39703530 |
T |
|
| Q |
201 |
aatagataacatggaagaagctttgaaaatatccctcaataagtaatgcaaaatgctaagaattaggacacattgacctatatatattgctatttaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| |||||| |
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| T |
39703531 |
aatagataacatggaagaagctttgaaaatatccctcaataagtaatgcaaaatgctaagaattaggacacattgacctatacat--tcctatataagaa |
39703628 |
T |
|
| Q |
301 |
acaacttgatatatatgctacctaaggcaaaaggtattgagataaatattatcttctgaacctctcgttgaattgaatccaaacattgttgaactcgatc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39703629 |
acaacttgatatatatgctacctaaggcaaaaggtattgagataaatatcatcttttgaacctcttgttgaattgaatccaaacattgttgaactcgatc |
39703728 |
T |
|
| Q |
401 |
ggtgttgttgaaatgaagttgatacaatgaaatacattttcgcagatgataaatataaagctagtgatgat |
471 |
Q |
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| T |
39703729 |
ggtgttgttgaaatgaagttgatacaatgaaatacattttcgcagatgataaatataaagttagagatgat |
39703799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 9e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 137 - 355
Target Start/End: Complemental strand, 5894105 - 5893887
Alignment:
| Q |
137 |
tcaaatttagtttctaaatgcacctggcaatgatagttaagaaatgaagtacataaaaacttcaaatagataacatggaagaagctttgaaaatatccct |
236 |
Q |
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| T |
5894105 |
tcaaatttagtttcttaatgcacctagcattgagagttaagaaatgaagtacataaaaggttcaaatagataacatcgaagaagctttgaaaatatcccc |
5894006 |
T |
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| Q |
237 |
caataagtaatgc-aaaatgctaagaattaggacacattgacctatatatattgctat-ttaagaaacaacttgatatatatgctacctaaggcaaaagg |
334 |
Q |
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| T |
5894005 |
caataagtcatgcaaaaatgctaagaatttggacacattga--tctattcattgctatataaagagacaacttgatatatatgctacctaaggcaaaagg |
5893908 |
T |
|
| Q |
335 |
tattgagataaatattatctt |
355 |
Q |
| |
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| T |
5893907 |
tattgagatgaatatcatctt |
5893887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 28059149 - 28058958
Alignment:
| Q |
1 |
acttcaaatttctcttcatcagcgttaggtataaacaattcttcggcatcaaatcctagaatatatttggatctaaatcatcgtcaagggctaacagcca |
100 |
Q |
| |
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||||||||||||||||||||| | |||||| || | ||||||||||||||||||||| |||| ||| ||||||||||||||||||||| | |||| ||| |
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| T |
28059149 |
acttcaaatttctcttcatcaacattaggtctag-cgattcttcggcatcaaatcctacaatacattcggatctaaatcatcgtcaaggac-aacaacca |
28059052 |
T |
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| Q |
101 |
tttacttgctcatgtattgcttcaattattttagcctcaaatttagtttctaaatgcacctggcaatgatagttaagaaatgaagtacataaaa |
194 |
Q |
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| T |
28059051 |
tttacttgctcatatattgcttcaattattttagcctcaaatttagtttctaaatgcacctagcattaagagttaagaaatgaagtacataaaa |
28058958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 28058959 - 28058895
Alignment:
| Q |
218 |
aagctttgaaaatatccctcaataagtaatgcaaaa-tgctaagaattaggacacattgacctat |
281 |
Q |
| |
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||||||||||||| | || |||||||| |||||||| |||||||||||||| |||| ||| |||| |
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| T |
28058959 |
aagctttgaaaatttaccccaataagtcatgcaaaaatgctaagaattagggcacaatgatctat |
28058895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 927193 - 927294
Alignment:
| Q |
51 |
aaatcctagaatatatttggatctaaatcatcgtcaagggctaacagccatttacttgctcatgtattgcttcaattattttagcctcaaatttagtttc |
150 |
Q |
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||||| ||||||| || |||| |||||||| ||||||| | |||| |||||||||||||||| |||||||||||||| |||| ||||||||||||| || |
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| T |
927193 |
aaatcttagaatacgttcggatataaatcatggtcaaggcc-aacaaccatttacttgctcatatattgcttcaatta-tttaacctcaaatttagtctc |
927290 |
T |
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| Q |
151 |
taaa |
154 |
Q |
| |
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|||| |
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| T |
927291 |
taaa |
927294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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