View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0092-INSERTION-2 (Length: 205)

Name: NF0092-INSERTION-2
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0092-INSERTION-2
NF0092-INSERTION-2
[»] chr5 (7 HSPs)
chr5 (1-205)||(39675767-39675971)
chr5 (25-205)||(10866218-10866398)
chr5 (25-205)||(10873907-10874087)
chr5 (25-205)||(10878978-10879158)
chr5 (25-205)||(10884049-10884229)
chr5 (14-198)||(10887983-10888167)
chr5 (16-198)||(10045775-10045957)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 39675767 - 39675971
Alignment:
Q  1 tcactgtcacaaacttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675767 tcactgtcacaaacttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaaga 39675866  T
Q  101 tccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39675867 tccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgt 39675966  T
Q  201 tgcct 205  Q
    |||||    
T  39675967 tgcct 39675971  T

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Target: chr5; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 10866218 - 10866398
Alignment:
Q  25 tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg 124  Q
    |||||||||||   | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  10866218 tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg 10866317  T
Q  125 tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgcct 205  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||    
T  10866318 tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgcct 10866398  T

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Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 10874087 - 10873907
Alignment:
Q  25 tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg 124  Q
    |||||||||||   | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  10874087 tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg 10873988  T
Q  125 tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgcct 205  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||    
T  10873987 tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgcct 10873907  T

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Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 10879158 - 10878978
Alignment:
Q  25 tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg 124  Q
    |||||||||||   | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  10879158 tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg 10879059  T
Q  125 tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgcct 205  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||    
T  10879058 tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgcct 10878978  T

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Target: chr5; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 10884229 - 10884049
Alignment:
Q  25 tacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacacctctccatg 124  Q
    |||||||||||   | ||||||| |||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |    
T  10884229 tacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctccacg 10884130  T
Q  125 tcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggcgttgcct 205  Q
    ||||||||||||| |||||||| ||||| ||||||||||| |||| | || |||||||||   ||||||||||| ||||||    
T  10884129 tcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgcct 10884049  T

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Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 10888167 - 10887983
Alignment:
Q  14 cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac 113  Q
    |||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  10888167 cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac 10888068  T
Q  114 acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggc 198  Q
    |||||||||  |||||||| |||| |||||| ||||| ||||||||||||| |||| | |  |||||||||  ||||||||||||    
T  10888067 acctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggc 10887983  T

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Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 10045775 - 10045957
Alignment:
Q  16 tcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctacac 115  Q
    |||||||| |||||||||||| |  ||||||||||||| |||||||||||||| || ||||||||| || |||||||||| |||||||||||||| ||||    
T  10045775 tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac 10045874  T
Q  116 ctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttcttcggc 198  Q
    |||| ||||| ||||||||||| ||||||   | | | ||||||||||| |||| | |||| ||||||| |||||||||||||    
T  10045875 ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggc 10045957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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