View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0092-INSERTION-4 (Length: 178)

Name: NF0092-INSERTION-4
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0092-INSERTION-4
NF0092-INSERTION-4
[»] chr2 (2 HSPs)
chr2 (4-111)||(4592847-4592954)
chr2 (4-90)||(10255919-10256009)
[»] chr5 (2 HSPs)
chr5 (4-111)||(5347943-5348052)
chr5 (7-90)||(36429532-36429615)
[»] chr8 (3 HSPs)
chr8 (4-111)||(14790893-14791006)
chr8 (4-90)||(20112076-20112160)
chr8 (8-68)||(18308842-18308900)
[»] chr3 (3 HSPs)
chr3 (4-111)||(54560253-54560362)
chr3 (4-90)||(47470944-47471030)
chr3 (4-93)||(50838048-50838139)
[»] scaffold0102 (1 HSPs)
scaffold0102 (4-90)||(32602-32688)
[»] chr1 (1 HSPs)
chr1 (4-93)||(47445571-47445660)
[»] chr6 (5 HSPs)
chr6 (4-100)||(15347663-15347761)
chr6 (4-93)||(6009218-6009313)
chr6 (4-90)||(30709739-30709829)
chr6 (4-93)||(17732605-17732698)
chr6 (76-111)||(15348081-15348116)
[»] chr4 (2 HSPs)
chr4 (10-93)||(49681835-49681918)
chr4 (4-90)||(27455168-27455256)
[»] chr7 (2 HSPs)
chr7 (4-52)||(36067603-36067651)
chr7 (42-93)||(36067544-36067595)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 4e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 4592954 - 4592847
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattt 103  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592954 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaattt 4592855  T
Q  104 tttctgga 111  Q
    ||||||||    
T  4592854 tttctgga 4592847  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 10256009 - 10255919
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga----atcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||    
T  10256009 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 10255919  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 5348052 - 5347943
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga--atcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaat 101  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348052 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaat 5347953  T
Q  102 tttttctgga 111  Q
    ||||||||||    
T  5347952 tttttctgga 5347943  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 36429615 - 36429532
Alignment:
Q  7 ggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  36429615 ggttgttgttgattaattcaagaaggtaacaaacaagagagagagaatcattataaagtgtgtgatgttaatgatgatgttgtt 36429532  T

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Target: chr8 (Bit Score: 91; Significance: 2e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 14791006 - 14790893
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga------atcattagaaagtgtgtgatgttgatgatgatgttgttgtttctt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||    
T  14791006 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagagagataatcattagaaagtgtgtgatgttgatgatgatgttgttgtttctt 14790907  T
Q  98 aaattttttctgga 111  Q
    ||||||||||||||    
T  14790906 aaattttttctgga 14790893  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 20112076 - 20112160
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    |||||||| |||||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||    
T  20112076 aagggttgctgttgattaattcaagaaggtaacaaacaagag--agagaatcattataaagtgtgtgatgttgatgatgatgttgtt 20112160  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 18308900 - 18308842
Alignment:
Q  8 gttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtg 68  Q
    ||||||||||||||||| |||| ||||||||||||||||  ||||||||||| ||||||||    
T  18308900 gttgttgttgattaattcaagatggtaacaaacaagaga--gagaatcattaaaaagtgtg 18308842  T

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Target: chr3 (Bit Score: 91; Significance: 2e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 54560362 - 54560253
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga--atcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaat 101  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54560362 aagggttgtagttgattaattcaagaaggtaacaaacaagagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaat 54560263  T
Q  102 tttttctgga 111  Q
    ||||||||||    
T  54560262 tttttctgga 54560253  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 47471030 - 47470944
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47471030 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 47470944  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 50838048 - 50838139
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaaca--agagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  50838048 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagaatcattagaaagtgtgtgaggttgatgatgatgatgttgtt 50838139  T

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Target: scaffold0102 (Bit Score: 83; Significance: 1e-39; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 32688 - 32602
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32688 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgtt 32602  T

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Target: chr1 (Bit Score: 82; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 47445571 - 47445660
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47445571 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagaatcattagaaaatgtgtgatgttgatgatgatgttgttgtt 47445660  T

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Target: chr6 (Bit Score: 80; Significance: 9e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 9e-38
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 15347761 - 15347663
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga--atcattagaaagtgtgtgatgttgatgatgatgttgttgtttcttaaa 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  15347761 aagggttgttgttgattaatttaagaaggtaacaaacaagagagagagagaatcattagaaagtgtgcgatgttgatgatgatgttgttgtttcttaaa 15347663  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 6009218 - 6009313
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagag------agagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    ||||||||||||||||||||| ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6009218 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 6009313  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 30709829 - 30709739
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga----atcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||    
T  30709829 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 30709739  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 8e-29
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 17732605 - 17732698
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaaca----agagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    ||||||||||||||||||||| ||||||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  17732605 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagagaatcattagaaagtgtgtgaggttgatgatgatgatgttgtt 17732698  T

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Target: chr6; HSP #5
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 15348081 - 15348116
Alignment:
Q  76 gatgatgatgttgttgtttcttaaattttttctgga 111  Q
    |||||||||| ||||||||||||| |||||||||||    
T  15348081 gatgatgatgatgttgtttcttaatttttttctgga 15348116  T

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Target: chr4 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 49681835 - 49681918
Alignment:
Q  10 tgttgttgattaattgaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49681835 tgttgttgatgaattcaagaaggtaacaaacaagagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 49681918  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 27455256 - 27455168
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga--atcattagaaagtgtgtgatgttgatgatgatgttgtt 90  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  27455256 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagagagaatcattataaagtgtgtgatgttgatgatgatgttgtt 27455168  T

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Target: chr7 (Bit Score: 45; Significance: 7e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 36067651 - 36067603
Alignment:
Q  4 aagggttgttgttgattaattgaagaaggtaacaaacaagagagagaga 52  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36067651 aagggttgttgttgattaattcaagaaggtaacaaacaagagagagaga 36067603  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 36067595 - 36067544
Alignment:
Q  42 agagagagagaatcattagaaagtgtgtgatgttgatgatgatgttgttgtt 93  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  36067595 agagagagagaattattagaaagtgtgtgatgttgaagatgatgttgttgtt 36067544  T

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