View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0092-INSERTION-6 (Length: 138)
Name: NF0092-INSERTION-6
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0092-INSERTION-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 42694858 - 42694721
Alignment:
| Q |
1 |
cctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtat |
100 |
Q |
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| T |
42694858 |
cctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtat |
42694759 |
T |
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| Q |
101 |
gcaactcctggatttataatgccaaacaccacaaactt |
138 |
Q |
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| T |
42694758 |
gcaactcctggatttataatgccaaacaccacaaactt |
42694721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 42686741 - 42686856
Alignment:
| Q |
1 |
cctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtat |
100 |
Q |
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| T |
42686741 |
cctggtgcattttacatcaagaattatatgcaagttgagttttatctcaagagtctaactcttgaagatgttccaaaccatggaaccattcgatttgtat |
42686840 |
T |
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| Q |
101 |
gcaactcctggattta |
116 |
Q |
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| T |
42686841 |
gcaactcttgggttta |
42686856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 1e-17; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 6323076 - 6323003
Alignment:
| Q |
43 |
ttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgcaactcctggattta |
116 |
Q |
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| T |
6323076 |
ttccttgtaagtttgacacttgaagatattccaaaccatggaaccatcaactttgtatgcaactcatggattta |
6323003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 4 - 116
Target Start/End: Complemental strand, 6354123 - 6354011
Alignment:
| Q |
4 |
ggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgca |
103 |
Q |
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| T |
6354123 |
ggagctttttacatcgataattttatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggatccatccactttgtctgca |
6354024 |
T |
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| Q |
104 |
actcctggattta |
116 |
Q |
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| T |
6354023 |
actcatggattta |
6354011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 6425636 - 6425546
Alignment:
| Q |
36 |
tgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgcaactcctggatttataatgccaaa |
126 |
Q |
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| T |
6425636 |
tgagttcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcttgggtttacaatgacaaa |
6425546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 7461115 - 7461023
Alignment:
| Q |
22 |
aactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgcaactcctggatt |
114 |
Q |
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| T |
7461115 |
aactatatgcaaggtgaattcttccttgtgagtttgacacttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatggatt |
7461023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 6265642 - 6265521
Alignment:
| Q |
1 |
cctggagcattttacatcaagaactttatgcaaactgagtttttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtat |
100 |
Q |
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| T |
6265642 |
cctggagcattcaaaattaagaactttatgtcaactgagttcctccttgtgagtttgactcttgatgatatcccaaacgttggaaccattcactttgttt |
6265543 |
T |
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| Q |
101 |
gcaactcctggatttataatgc |
122 |
Q |
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| T |
6265542 |
gcaactcgtgggtttacaatgc |
6265521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 6364839 - 6364766
Alignment:
| Q |
43 |
ttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgcaactcctggattta |
116 |
Q |
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| T |
6364839 |
ttccttgtcagcttgactcttgaagatgttccaaaccatggaaccatcaactttgtttgcaactcatgggttta |
6364766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 6371656 - 6371577
Alignment:
| Q |
43 |
ttccttgtgagtttgactcttgaagacattccaaatcatggaagcatctactttgtatgcaactcctggatttataatgc |
122 |
Q |
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| T |
6371656 |
ttccttgtgagtttgacccttaatgatgttccaaatcatggaaccatcaactttaactgcaactcatggatttacaatgc |
6371577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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