View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0092_high_3 (Length: 250)
Name: NF0092_high_3
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0092_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 39770002 - 39770216
Alignment:
| Q |
23 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagttcgctttataatgatcaaca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39770002 |
acatcatcataattctagcttaacatacaaccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtttgctttataatgatcaac- |
39770100 |
T |
|
| Q |
123 |
atcaacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcacatgagctaaagaaattatatgtatacgagaggtaat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39770101 |
--caacaattatgtgtgggcaggggatcaacaattatgtgttgggattcaaatggtagtttcacatgagctaaataaattatatgtatacgagaggtaat |
39770198 |
T |
|
| Q |
223 |
taatccatatactcattg |
240 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
39770199 |
taatccatatactcattg |
39770216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 34979035 - 34978955
Alignment:
| Q |
23 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagtt |
103 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34979035 |
acatcatcataattctagcttagaataaacctaagtttagtttacaaagatgttaatctagagatgccacatcatcaagtt |
34978955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 15802612 - 15802555
Alignment:
| Q |
42 |
ttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaag |
101 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15802612 |
ttaacataaacccaaatt--gtttacaaagatggtaatctagagatgccacatcatcaag |
15802555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 30087912 - 30087998
Alignment:
| Q |
23 |
acatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccacatcatcaagttcgcttt |
109 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| | || || ||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30087912 |
acatcatcataattctagcttaatatagttccatattttgtctacaaagatgttaatctagagatgccacatcatcaagtttgcttt |
30087998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 978 times since January 2019
Visitors: 1288