View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0092_low_4 (Length: 250)
Name: NF0092_low_4
Description: NF0092
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0092_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 39809395 - 39809154
Alignment:
| Q |
1 |
aatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809395 |
aatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcc |
39809296 |
T |
|
| Q |
101 |
cttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809295 |
cttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattga |
39809196 |
T |
|
| Q |
201 |
aatgatcaccactttctctcgctgcagccgccaccctttgct |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809195 |
aatgatcaccactttctctcgctgcagccgccaccctttgct |
39809154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 204
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
31 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
130 |
Q |
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||||| ||||||||| || |||||||||||||||||||||||||||||||| | ||||| || | ||||||||| || || || ||||| ||||||| | |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
|
| Q |
131 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
204 |
Q |
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|| || |||| | |||||| ||||||||| ||| || ||||| ||||| |||||||||||||||||||| |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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