View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0093_low_5 (Length: 253)
Name: NF0093_low_5
Description: NF0093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0093_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 574373 - 574151
Alignment:
| Q |
27 |
actatatctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttgggttcttagtgtt |
126 |
Q |
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| T |
574373 |
actatatctttataacttgtcttcaacctacctagtccctaccatctccctctttttcagatcctgaatttttgtttagctaccttggtttcttagtgtt |
574274 |
T |
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| Q |
127 |
cttcccaatcattgctcatnnnnnnnnnnnnnttgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgt |
226 |
Q |
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| T |
574273 |
tttcccatccattgctcataaaaaaaaa----ttgtattatatttataccaaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgt |
574178 |
T |
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| Q |
227 |
actgaactcatctttcatgacagcaga |
253 |
Q |
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| T |
574177 |
actgaactcatctttcatgacagcaga |
574151 |
T |
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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 145
Target Start/End: Complemental strand, 49245291 - 49245176
Alignment:
| Q |
29 |
tatatctttataacttgtcttcaacctacctagtccctaccatcttcctctttttcagatcctgaatttttgttcagctaccttgggttcttagtgttct |
128 |
Q |
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| T |
49245291 |
tatatctttataacttgtcttcaacgtacgtagtccctaccatctccctctttttcagat-ctgaatttttgtttaactaccttggtttcttagtgtttt |
49245193 |
T |
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| Q |
129 |
tcccaatcattgctcat |
145 |
Q |
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| T |
49245192 |
tcccatccattgctcat |
49245176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 2471925 - 2471855
Alignment:
| Q |
176 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatga |
246 |
Q |
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| T |
2471925 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga |
2471855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 8980981 - 8981051
Alignment:
| Q |
176 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatga |
246 |
Q |
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| T |
8980981 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga |
8981051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 27135124 - 27135054
Alignment:
| Q |
176 |
caaaaatgctaaacatcgcgacacgctcatcacgagtatttcacgaattgtactgaactcatctttcatga |
246 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
27135124 |
caaaaatgctaaacatcacgacacgctcatcacgagtatttcacgaattgtactgaattcatctttcatga |
27135054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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