View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0093_low_6 (Length: 251)
Name: NF0093_low_6
Description: NF0093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0093_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 30 - 238
Target Start/End: Original strand, 18852881 - 18853089
Alignment:
| Q |
30 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaag |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18852881 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccacgcccttaatttcaag |
18852980 |
T |
|
| Q |
130 |
aaaaacctgcaataaaaatcaacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatcta |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18852981 |
aaaaacctgcaataaaaatcaacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaaaatcta |
18853080 |
T |
|
| Q |
230 |
tatcaagaa |
238 |
Q |
| |
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||||||||| |
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|
| T |
18853081 |
tatcaagaa |
18853089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 50014062 - 50014264
Alignment:
| Q |
30 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaag |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
50014062 |
caaatctggtatctggacggtccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaag |
50014161 |
T |
|
| Q |
130 |
aaaaacctgcaataaaaatcaacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatcta |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50014162 |
aaaaacctgcaataaaaaccaacttcaaaattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatcta |
50014258 |
T |
|
| Q |
230 |
tatcaa |
235 |
Q |
| |
|
|||||| |
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| T |
50014259 |
tatcaa |
50014264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 18841822 - 18842023
Alignment:
| Q |
30 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
18841822 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaag |
18841921 |
T |
|
| Q |
130 |
aaaaacctgcaataaaaatcaacttcaaaatttgccacaatat---tatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagat |
226 |
Q |
| |
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|||||||| | ||||| | ||||||| |||| ||||| | |||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
18841922 |
aaaaacctac----aaaatta---gcaaaattagccataatatacatgcatgattcgatttttatggttttctttatgtaaaaccatgtccacagaagat |
18842014 |
T |
|
| Q |
227 |
ctatatcaa |
235 |
Q |
| |
|
||||||||| |
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|
| T |
18842015 |
ctatatcaa |
18842023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 32 - 235
Target Start/End: Original strand, 51299048 - 51299250
Alignment:
| Q |
32 |
aatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaa |
131 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||| |
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| T |
51299048 |
aatctggtatctggacggtccgaaccatatctattcattgcttcagcatatgtaagcctagggaaaggatttggtaattccacacccttaatttcaagaa |
51299147 |
T |
|
| Q |
132 |
aaacctgcaataaaaatcaacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctata |
231 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51299148 |
aaacctgcaataaaaaccaacttcaaaattagccataata-tacatgattcgatttttatggttttctttatgtaaaaccacgtccacaaaagatctata |
51299246 |
T |
|
| Q |
232 |
tcaa |
235 |
Q |
| |
|
|||| |
|
|
| T |
51299247 |
tcaa |
51299250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 44111134 - 44111336
Alignment:
| Q |
30 |
caaatctggtatctggatggtccgaaccatatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaag |
129 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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|
| T |
44111134 |
caaatctggtatctggacggtccgaaccatatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaag |
44111233 |
T |
|
| Q |
130 |
aaaaacctgcaataaaaatcaacttcaaaatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatcta |
229 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44111234 |
aaaaacctgcaataaaaaccaacttcaaaattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatcta |
44111330 |
T |
|
| Q |
230 |
tatcaa |
235 |
Q |
| |
|
|||||| |
|
|
| T |
44111331 |
tatcaa |
44111336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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