View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0093_low_8 (Length: 209)

Name: NF0093_low_8
Description: NF0093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0093_low_8
NF0093_low_8
[»] chr3 (12 HSPs)
chr3 (16-177)||(19186806-19186965)
chr3 (16-114)||(16357814-16357908)
chr3 (16-114)||(21977129-21977225)
chr3 (16-114)||(21999560-21999656)
chr3 (16-114)||(22161755-22161851)
chr3 (92-178)||(17793443-17793529)
chr3 (92-178)||(19101883-19101969)
chr3 (92-177)||(5941664-5941749)
chr3 (37-112)||(10302764-10302837)
chr3 (100-171)||(21100629-21100700)
chr3 (92-137)||(15958242-15958287)
chr3 (37-112)||(10341101-10341174)
[»] chr4 (11 HSPs)
chr4 (37-177)||(12230853-12230991)
chr4 (16-114)||(15870940-15871036)
chr4 (16-114)||(15888515-15888611)
chr4 (16-112)||(13268043-13268137)
chr4 (37-112)||(13559361-13559434)
chr4 (92-170)||(8808812-8808890)
chr4 (92-159)||(16282913-16282980)
chr4 (92-170)||(11558510-11558588)
chr4 (38-106)||(19727534-19727600)
chr4 (76-112)||(18554716-18554752)
chr4 (52-112)||(13235283-13235341)
[»] scaffold0385 (1 HSPs)
scaffold0385 (16-114)||(16169-16265)
[»] chr2 (7 HSPs)
chr2 (98-172)||(24788601-24788675)
chr2 (92-170)||(44583932-44584010)
chr2 (37-114)||(29718090-29718165)
chr2 (92-177)||(23651793-23651878)
chr2 (37-116)||(26861203-26861280)
chr2 (94-134)||(21554002-21554042)
chr2 (37-112)||(18985269-18985342)
[»] chr7 (5 HSPs)
chr7 (92-169)||(22612532-22612609)
chr7 (92-172)||(11657709-11657789)
chr7 (92-172)||(13475071-13475151)
chr7 (37-112)||(9692984-9693057)
chr7 (37-107)||(16068058-16068126)
[»] scaffold0118 (1 HSPs)
scaffold0118 (16-98)||(11980-12060)
[»] scaffold0364 (1 HSPs)
scaffold0364 (41-112)||(14612-14681)
[»] chr6 (5 HSPs)
chr6 (92-170)||(15119009-15119086)
chr6 (76-112)||(19545140-19545176)
chr6 (51-107)||(22395459-22395513)
chr6 (38-107)||(14746596-14746663)
chr6 (76-114)||(26587859-26587897)
[»] scaffold0166 (1 HSPs)
scaffold0166 (92-177)||(3419-3504)
[»] chr5 (4 HSPs)
chr5 (92-177)||(24760922-24761007)
chr5 (37-110)||(32948857-32948927)
chr5 (76-109)||(25581329-25581362)
chr5 (37-116)||(14137995-14138072)
[»] scaffold0145 (1 HSPs)
scaffold0145 (92-159)||(14735-14802)
[»] chr1 (3 HSPs)
chr1 (76-112)||(21496644-21496680)
chr1 (78-114)||(15545327-15545363)
chr1 (76-116)||(43154381-43154421)
[»] scaffold0207 (1 HSPs)
scaffold0207 (37-109)||(737-806)
[»] chr8 (5 HSPs)
chr8 (37-112)||(10454067-10454140)
chr8 (76-116)||(15727839-15727879)
chr8 (100-134)||(17883301-17883335)
chr8 (76-116)||(19862364-19862404)
chr8 (76-116)||(19867001-19867041)
[»] scaffold0408 (1 HSPs)
scaffold0408 (38-107)||(15031-15098)
[»] scaffold0010 (1 HSPs)
scaffold0010 (38-107)||(143149-143216)
[»] scaffold1043 (1 HSPs)
scaffold1043 (40-107)||(516-581)
[»] scaffold0094 (1 HSPs)
scaffold0094 (76-112)||(2496-2531)
[»] scaffold0035 (1 HSPs)
scaffold0035 (76-116)||(15397-15437)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 19186806 - 19186965
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaatc 115  Q
    ||||||| ||||||||| || ||||||||||||| | |||| ||||||||||||||| |||  |||||||||||||||||||||| ||||||||||||||    
T  19186806 acatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagata--ccctaaagtgcaaagattctcctccttacctcgaatc 19186903  T
Q  116 cgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    ||||||||||||||||||| || || |||||| | ||||||||| |||||||||||| ||||    
T  19186904 cgtagaaaccttcggtttggctcgatgttgctgccctagggttccgcttctctccctctgct 19186965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 16357908 - 16357814
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| ||||||| |||||||||||||||||| ||| |||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||    
T  16357908 acatcataacagcaaaagtgcattaaaatttaagacaa-cctcccatcataaatta--agataccctaaagtgcaaagattct-ccccttacctcgaat 16357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 21977129 - 21977225
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||  | ||||||||||||||||||||||| |||||||||| ||||    
T  21977129 acatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaatta--agataccctaaagtgcaaagattctaccccttaccttgaat 21977225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 21999560 - 21999656
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| ||||||||| || ||||||||||||| ||||||| |||||||||||||  | ||||||||||||||||||||||| |||||||||| ||||    
T  21999560 acatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaatta--agataccctaaagtgcaaagattctaccccttaccttgaat 21999656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 22161755 - 22161851
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| ||||||||| || ||| ||||||||| ||||||| |||||||||||||  | ||||||||||||||||||||||| |||||||||| ||||    
T  22161755 acatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaatta--agataccctaaagtgcaaagattctaccccttaccttgaat 22161851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 17793443 - 17793529
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgcta 178  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| ||||| ||||| |||||||| ||| |||||    
T  17793443 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctctgcta 17793529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 92 - 178
Target Start/End: Original strand, 19101883 - 19101969
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgcta 178  Q
    |||||||||||||||||||||||| |||||||||||||||||| || || |||||| ||||| ||||| |||||||| ||| |||||    
T  19101883 agattctcccccttacctcgaatctgtagaaaccttcggtttggctcgatgttgctgcactacggttccgcttctcttcctctgcta 19101969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 5941749 - 5941664
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    |||||||| |||||||||| ||||| |||||||||| ||||||||  || |||||||||||||||||  |||||||||||||||||    
T  5941749 agattctctcccttacctcaaatccatagaaacctttggtttgacccgatgttgctacactagggtttcgcttctctccctatgct 5941664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 10302764 - 10302837
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||||||||| |||||||||||||||| ||||| |||  ||||||||||||||||||||||||| ||| ||||    
T  10302764 attaaaatttaagacaaccctcccatcatagattaagata--ccctaaagtgcaaagattctcccccgtacttcga 10302837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 21100700 - 21100629
Alignment:
Q  100 ccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccc 171  Q
    ||||||||||| ||||| ||||||||||||||||| || || |||||| ||||||||||| |||||||||||    
T  21100700 ccccttacctcaaatccatagaaaccttcggtttggctcgatgttgctgcactagggttccgcttctctccc 21100629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 15958287 - 15958242
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgact 137  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  15958287 agattctcccccttacctcaaatccgtagaaaccttcggttggact 15958242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 10341101 - 10341174
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||||||||| ||| ||||||| |||| ||||| |||  |||||||||||||| |||||||||||||| ||||    
T  10341101 attaaaatttaagacaatcctcccaccatagattaagata--ccctaaagtgcaaatattctcccccttacttcga 10341174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 177
Target Start/End: Original strand, 12230853 - 12230991
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaatccgtagaaaccttcggtttgac 136  Q
    ||||||||||||| |||||||||||| ||| ||||| |||  |||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| |    
T  12230853 attaaaatttaagacaaccctcccataatagattaagata--ccctaaagtgcaaagattatcccccttacctcgaatctgtagaaaccttcagtttggc 12230950  T
Q  137 ttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    |||| |||||||||| |||||||||||||||||||| ||||    
T  12230951 ttgatgttgctacacgagggttctgcttctctccctttgct 12230991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 15871036 - 15870940
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| |||| || |||||||||||||||||| |||||||||||||||||||||  | |||||||||||||||||||||||||||||||||| ||||    
T  15871036 acatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaatta--agataccctaaagtgcaaagattctcccccttaccttgaat 15870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 15888611 - 15888515
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||| | ||||  |||||||||||||||||||||| ||||||| ||||    
T  15888611 acatcataacagcaaaagtgcattaaaatttaagacaaccctcccatcataaatttagatat--cctaaagtgcaaagattctccctcttaccttgaat 15888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 13268043 - 13268137
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||| ||| ||||| || |||||||||||||  ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  13268043 acatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagata--ccctaaagtgcaaagattctcccccttacctcga 13268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 13559434 - 13559361
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||||||||| |||||||||||||||| ||||| |||  | |||||||||||||||||||| |||||||||||    
T  13559434 attaaaatttaagacaaccctcccatcatagattaagata--ctctaaagtgcaaagattctcctccttacctcga 13559361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 8808812 - 8808890
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctcc 170  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||| ||  | ||| ||||||||||| || |||||||    
T  8808812 agattctcccccttacctcaaatccgtagaaacctttggtttgactcgatatcgctgcactagggttccgcctctctcc 8808890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 16282980 - 16282913
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttc 159  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || ||||||||    
T  16282980 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttc 16282913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 11558510 - 11558588
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctcc 170  Q
    ||||||||| |||||||| |||||||||||||||||||||||| || || |||| | || ||||||||  |||||||||    
T  11558510 agattctcctccttacctagaatccgtagaaaccttcggtttggctcgatgttgttgcattagggttccacttctctcc 11558588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 19727600 - 19727534
Alignment:
Q  38 ttaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctccccctta 106  Q
    |||||||||||| |||||||||| ||||| ||||| |||  |||||||||||||||||||||| |||||    
T  19727600 ttaaaatttaagacaaccctcccgtcatagattaagata--ccctaaagtgcaaagattctccgcctta 19727534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 18554752 - 18554716
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||||||||||||||||||||||||||||||||||    
T  18554752 ataccctaaagtgcaaagattctcccccttacctcga 18554716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 13235283 - 13235341
Alignment:
Q  52 aaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||| || |||||||||||  ||||||||||||||||||||||| |||  |||||||||    
T  13235283 aacccttccgtcataaattaa--tataccctaaagtgcaaagattcccccgtttacctcga 13235341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 16169 - 16265
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||| | ||||||| || ||||||||||||| | |||||||||||||||||||| |||  ||||||||| ||||||||||||||||||||||||||    
T  16169 acatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagata--ccctaaagtacaaagattctcccccttacctcgaat 16265  T

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Target: chr2 (Bit Score: 55; Significance: 8e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 24788601 - 24788675
Alignment:
Q  98 tcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccct 172  Q
    ||||||||||||||||||||||||||||||||||||| || || |||||| ||||||||||| ||||||||||||    
T  24788601 tcccccttacctcgaatccgtagaaaccttcggtttggctagaagttgctgcactagggttccgcttctctccct 24788675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 92 - 170
Target Start/End: Complemental strand, 44584010 - 44583932
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctcc 170  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| ||||||| ||| ||||||||||    
T  44584010 agattctcccccttacctcaaatccgtagaaacctttggtttgacttgatgttgctgcactaggattccgcttctctcc 44583932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 29718165 - 29718090
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||||||||| ||||||| |||||||| ||||| |||  | |||||||||||| |||||||||||||||||||||    
T  29718165 attaaaatttaagacaacccttccatcatagattaagata--ctctaaagtgcaaatattctcccccttacctcgaat 29718090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 23651878 - 23651793
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    |||||||||||||||||||||||| ||||| |||||| ||||| || || |||||| || |||||||| |||||||| ||| ||||    
T  23651878 agattctcccccttacctcgaatctgtagataccttcagtttggctcgatgttgctgcattagggttccgcttctctacctttgct 23651793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 26861280 - 26861203
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||  ||||||| |||||||  ||||| |||  |||||||||||||||| |||||||||||||||||||||    
T  26861280 attaaaatttaatacaacccttccatcatggattaagata--ccctaaagtgcaaagaatctcccccttacctcgaatcc 26861203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 21554042 - 21554002
Alignment:
Q  94 attctcccccttacctcgaatccgtagaaaccttcggtttg 134  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21554042 attctcccccttacctcgaatccgtagaaaccttcgttttg 21554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 18985342 - 18985269
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||||||||  ||||||||| |||||| ||||  |||  |||||| ||||||||||||||||||||| |||||    
T  18985342 attaaaatttaatacaaccctcctatcatagattacgata--ccctaatgtgcaaagattctcccccttatctcga 18985269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 3e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 22612609 - 22612532
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctc 169  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || |||| | ||||||||||| |||||||||    
T  22612609 agattctcccccttacctcgaatccgtagaaaccttcggtttggctcgatgttgttgcactagggttccgcttctctc 22612532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 11657709 - 11657789
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccct 172  Q
    |||||||| ||||||||||||||||||||||||||| |||||| ||||| || ||| |||||||||||  |||||||||||    
T  11657709 agattctcacccttacctcgaatccgtagaaacctttggtttggcttgatgtagctgcactagggttcctcttctctccct 11657789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 13475151 - 13475071
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccct 172  Q
    ||||||| ||| |||||||||||||||||||||||||| |||| || || |||||| ||||||||||| ||||||||||||    
T  13475151 agattcttccctttacctcgaatccgtagaaaccttcgatttgcctcgatgttgctgcactagggttcagcttctctccct 13475071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 9693057 - 9692984
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||||||||||| |||||||||||||||| ||||| |||  | |||||||||||||||||||| |||||||||||    
T  9693057 attaaaatttaagacaaccctcccatcatagattaagata--ctctaaagtgcaaagattctcctccttacctcga 9692984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 16068126 - 16068058
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    ||||||||||||| |||||||||| ||||| ||||| |||  ||||||| |||||||||||||||||||||    
T  16068126 attaaaatttaagacaaccctcccgtcatagattaagata--ccctaaattgcaaagattctcccccttac 16068058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 11980 - 12060
Alignment:
Q  16 acatcatcacagcaacagtgcattaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattct 98  Q
    ||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||  | ||||||||||||||||| |||||    
T  11980 acatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaatta--agataccctaaagtgcaaatattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 14612 - 14681
Alignment:
Q  41 aaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    ||||| ||| |||||||||||||||| ||||| |||  ||||||||||||||||||||||||||||||||||    
T  14612 aaattaaagacaaccctcccatcatagattaagata--ccctaaagtgcaaagattctcccccttacctcga 14681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 15119009 - 15119086
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctcc 170  Q
    ||||||| |||||||||||||||| ||||||||||||| |||  || || |||||| ||||||||||||||||||||||    
T  15119009 agattcttccccttacctcgaatc-gtagaaaccttcgatttagctcgatgttgctgcactagggttctgcttctctcc 15119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 19545176 - 19545140
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||||||||||||||||||||||||||||||||||    
T  19545176 ataccctaaagtgcaaagattctcccccttacctcga 19545140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 22395513 - 22395459
Alignment:
Q  51 caaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    |||||||||||||||| ||||| |||  |||||||||||||||| ||||||||||||    
T  22395513 caaccctcccatcatatattaagata--ccctaaagtgcaaagactctcccccttac 22395459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 14746596 - 14746663
Alignment:
Q  38 ttaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    |||||||||||| ||||| || | ||||| ||||| |||  ||||| |||||||||||||||||||||||    
T  14746596 ttaaaatttaagtcaaccttctcctcatagattaagata--ccctatagtgcaaagattctcccccttac 14746663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 26587859 - 26587897
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  26587859 ataccctaaagtgaaaagattctcccctttacctcgaat 26587897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 3419 - 3504
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| || |  |||| | ||||||||||| | |||||||||||||||    
T  3419 agattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgct 3504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 24760922 - 24761007
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttctgcttctctccctatgct 177  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| || |  |||| | ||||||||||| | |||||||||||||||    
T  24760922 agattccccctcttacctcgaatccttagaaaccttcggtttggctcggtgttgttgcactagggttcaggttctctccctatgct 24761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 32948857 - 32948927
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctc 110  Q
    ||||||||| ||| ||||||||||||||  | |||    |||| ||||||||||||||||||||||||||||||    
T  32948857 attaaaattaaagacaaccctcccatcaagatttag---atactctaaagtgcaaagattctcccccttacctc 32948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 25581362 - 25581329
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacct 109  Q
    ||||||||||||| ||||||||||||||||||||    
T  25581362 ataccctaaagtggaaagattctcccccttacct 25581329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 14137995 - 14138072
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||| ||||||| |||||||||||||| | | ||| |||  |||||||||  | ||||| |||||||||||||||||||    
T  14137995 attaagatttaagacaaccctcccatcaaataataagata--ccctaaagtaaagagattgtcccccttacctcgaatcc 14138072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 14735 - 14802
Alignment:
Q  92 agattctcccccttacctcgaatccgtagaaaccttcggtttgacttgacgttgctacactagggttc 159  Q
    |||||||||||||||||||||| |||||||||| || ||||||||| || |||||| || ||||||||    
T  14735 agattctcccccttacctcgaacccgtagaaacatttggtttgactcgatgttgctgcagtagggttc 14802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 21496644 - 21496680
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||||||||||||||||||||||||||||||||||    
T  21496644 ataccctaaagtgcaaagattctcccccttacctcga 21496680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 15545327 - 15545363
Alignment:
Q  78 accctaaagtgcaaagattctcccccttacctcgaat 114  Q
    ||||||||||||||||||||| |||||||||||||||    
T  15545327 accctaaagtgcaaagattctaccccttacctcgaat 15545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 43154421 - 43154381
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  43154421 ataccctaaagttaagagattctcccccttacctcgaatcc 43154381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 806 - 737
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacct 109  Q
    ||||||||| ||| ||||||||| |||||| ||||| |||  ||||||||||||||| |||||||||||||||    
T  806 attaaaattaaagacaaccctccaatcatagattaagata--ccctaaagtgcaaag-ttctcccccttacct 737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 10454140 - 10454067
Alignment:
Q  37 attaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||||| || | |||||| ||||||||| ||||| |||  ||||||||| |||||||||| |||||||||||||    
T  10454140 attaaaatataggacaacccacccatcatagattaagata--ccctaaagttcaaagattcttccccttacctcga 10454067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 15727839 - 15727879
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  15727839 ataccctaaagtgtaaggattctcccccttacctcgaatcc 15727879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 134
Target Start/End: Original strand, 17883301 - 17883335
Alignment:
Q  100 ccccttacctcgaatccgtagaaaccttcggtttg 134  Q
    ||||||||||||||||| |||||||||||||||||    
T  17883301 ccccttacctcgaatccatagaaaccttcggtttg 17883335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 19862364 - 19862404
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  19862364 ataccctaaagtgaaaggaatctcccccttacctcgaatcc 19862404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 19867001 - 19867041
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  19867001 ataccctaaagtgaaaggaatctcccccttacctcgaatcc 19867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 15031 - 15098
Alignment:
Q  38 ttaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    |||||||||||| ||||| || | ||||| ||||| |||  ||||| |||||||||||||||||||||||    
T  15031 ttaaaatttaagtcaaccttctcctcatagattaagata--ccctatagtgcaaagattctcccccttac 15098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 143149 - 143216
Alignment:
Q  38 ttaaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    |||||||||||| ||||| |||||||||| ||||  | ||||| ||||||| |||||||| |||||||||    
T  143149 ttaaaatttaagacaaccttcccatcatagatta--agataccataaagtgaaaagattcacccccttac 143216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 581 - 516
Alignment:
Q  40 aaaatttaaggcaaccctcccatcataaattaacatataccctaaagtgcaaagattctcccccttac 107  Q
    |||||||||| |||||||| ||||||| ||||| |||  | ||| | |||||||||||||||||||||    
T  581 aaaatttaagacaaccctctcatcatagattaagata--ctctacattgcaaagattctcccccttac 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 2531 - 2496
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcga 112  Q
    |||||||||| ||||||||||||||||||||||||||    
T  2531 ataccctaaa-tgcaaagattctcccccttacctcga 2496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 15437 - 15397
Alignment:
Q  76 ataccctaaagtgcaaagattctcccccttacctcgaatcc 116  Q
    ||||||||||||| || || |||||||||||||||||||||    
T  15437 ataccctaaagtgaaaggaatctcccccttacctcgaatcc 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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