View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_16 (Length: 446)
Name: NF0095_high_16
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 43 - 439
Target Start/End: Complemental strand, 28380055 - 28379653
Alignment:
| Q |
43 |
aaccttaatgatgtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttac |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28380055 |
aaccttaatgatgtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttcttac |
28379956 |
T |
|
| Q |
143 |
tcaacatcttcatcttc------tcttaacctgcaaaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataa |
236 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379955 |
tcaacatcttcatcttcatcttctcttaacctacaaaagtaaaaatttgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaataa |
28379856 |
T |
|
| Q |
237 |
ttaaaaaatttaatgctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaataagacatggacgaacctta |
336 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379855 |
ttaaaaaaattaatgctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaataagacatggacgaacctta |
28379756 |
T |
|
| Q |
337 |
gaatatactaaatgtattaattttcttcatggnnnnnnnnnnnnnccatagaagatgaaagaataaaagaccaagtgagannnnnnngttttctcctatg |
436 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28379755 |
gaatatactaaatgtattaattttcttcatggaaaaaacaaaaaaccatagaagatgaaagaataaaagaccaagtgagatttttttgttttctcctatg |
28379656 |
T |
|
| Q |
437 |
ata |
439 |
Q |
| |
|
||| |
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|
| T |
28379655 |
ata |
28379653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 42 - 368
Target Start/End: Complemental strand, 28389698 - 28389364
Alignment:
| Q |
42 |
gaaccttaatgatgtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttctta |
141 |
Q |
| |
|
|||||| |||||||| ||||||| |||| |||| | ||||||||| || | || ||||||||| ||||||||| | |||||||||| |||||||||||| |
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|
| T |
28389698 |
gaacctcaatgatgtcttctcagcacaaacacataacaagaaacagaattgcacaatcattccaaaccaccaatataagataacatgtttgttcttctta |
28389599 |
T |
|
| Q |
142 |
ctcaacatcttcatcttc------tcttaacctgcaaaagtaaaaatatgaagctgcatttcatcagaaacatagttcaaggctaaaatagaagaaaata |
235 |
Q |
| |
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||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || ||||| || |
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| T |
28389598 |
ctcaacactttcatcttcatcatttcttaacctacaaaagtaaaaatttgaagctgcatttcataagaaacatatttcaaggctaaaaaagtagaaatta |
28389499 |
T |
|
| Q |
236 |
attaaaaaatttaatgctattaaactaccataccatatataaatgtaatgataattaaaagaatttcaacaagaaaggaaat-----aagacatggacga |
330 |
Q |
| |
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||||||||| |||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
28389498 |
attaaaaaaattaatgctattaaactactataccatatataaatatgatgataattaaaagaatttcaacaagaaaagaaatttttaaagacatggacga |
28389399 |
T |
|
| Q |
331 |
accttagaatatactaaatgtattaattttcttcatgg |
368 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
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| T |
28389398 |
accttagaata---taaatgtattaattttcttcatgg |
28389364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 42 - 159
Target Start/End: Original strand, 28414968 - 28415085
Alignment:
| Q |
42 |
gaaccttaatgatgtattctcagaacaagcacagagcaagaaacaaaacttcataatcattcctaaccaccaaaagaagataacattattgttcttctta |
141 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
28414968 |
gaaccttaatgatgtattctgagaacaagcacatagcaagaaacagaacttcacaatcattccaaaccaccaaaagaagataacattattgttcttcata |
28415067 |
T |
|
| Q |
142 |
ctcaacatcttcatcttc |
159 |
Q |
| |
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||||||| ||||||||| |
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|
| T |
28415068 |
ctcaacacgttcatcttc |
28415085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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