View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_17 (Length: 445)
Name: NF0095_high_17
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 397
Target Start/End: Original strand, 19082389 - 19082771
Alignment:
| Q |
8 |
aattggcatagttacacttaaagcaagatttttatgtttctagtttttcaagctttatgatttttctctgcaaataagtttgtggcttattttttatgac |
107 |
Q |
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| T |
19082389 |
aattggcatagttacacttaaagcaagattttaatgtttctagtttttcaagctttatgatttttctctgcaaataagtttgtggcttattttttatgac |
19082488 |
T |
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| Q |
108 |
ctgtaannnnnnngaataatacgttgaatcacgatgacattacattattaatttaccacataatcaaatataattccacannnnnnnnnatttctttctn |
207 |
Q |
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| T |
19082489 |
gtgtaaattttttgaataatacgttgaatcacgatgacattacattattaatttaccacataatcaaatataattccacttt--------tttttttcta |
19082580 |
T |
|
| Q |
208 |
nnnnnntaatataactccacatcatcaattaattaatatggcatgtcataaaa-aatcgtttgaaaacgagttgtgtgaaagaaattttaaacttgtaaa |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
19082581 |
aaaaaataatataattccacatcatcaattaattaatatggcatgtcataaaaaaatcgtttgaaaacgagttgtgcgaaagaaattttaaaattgtaaa |
19082680 |
T |
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| Q |
307 |
acatagactaaaattttagagaaacaaatccatggactaaaatctttttgagattaaaaatttgaaccatgtcaaattcttgttttctgat |
397 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19082681 |
acatagactaaaattttagataaacaaatgcatggactaaaatctttttgagattaaaaatttgaaccatgtcaaattcttgttttctgat |
19082771 |
T |
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