View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_20 (Length: 437)
Name: NF0095_high_20
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 50741948 - 50742322
Alignment:
| Q |
1 |
aagttggtttactccacagtgacttgagtttaannnnnnnatgttacaatatcttcagccttgatttgttacaaattcattgattctgattgattgtatt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50741948 |
aagttggtttactccacagtgacttgagtttaagggggggatgttacaatatcttcagccttgatttgttacaaattcattgattctgattgattgtatt |
50742047 |
T |
|
| Q |
101 |
aggaggataccatttatttgtaactaccatatcttgtatggctagaatcttctgtaaagtcttgacatacaaagaaatatacagaaatgcaatgcaatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50742048 |
aggaggataccatttatttgtaactaccatatcttgtatggctagaatcttctgtaaagtcttgacatacaaagaaatatacagaaatgcaatgcaatcc |
50742147 |
T |
|
| Q |
201 |
ttgacaacaatattagcttacaatgaaaacccgccgtccctttcacttcaaaatccaatgttgactgcaaatgacattnnnnnnnnnnnngcaagtgaga |
300 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
50742148 |
ttgacaacaatattagcttacaatgaaaacctg----ccctttcacttcaaaatccaatgttgactgcaaatgacattaaaaaacaaaaagcaagtgaga |
50742243 |
T |
|
| Q |
301 |
gcttacgggtgtggaacattatgccaagcagttacattaggaatgtg---ttcttcttcttctccttcctgtccatcta |
376 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50742244 |
gcttacgggtgtggaacattatgccaagcagttacattaggaatgtgttcttcttcttcttctccttcctgtccatcta |
50742322 |
T |
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