View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_21 (Length: 420)
Name: NF0095_high_21
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 15783933 - 15783552
Alignment:
| Q |
13 |
cagaggattgaacaacacgtgagtttaaaagatttgagggtacggtcctgagagcgtggggaaaacataacggcatccaacatttgacgaaactgaatca |
112 |
Q |
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| T |
15783933 |
cagaggattgaacaacacgtgagtttaaaagatttgtgggtactgtcctgagagcgtggggaaaacataacggcatccaacatttgacggaactgaatca |
15783834 |
T |
|
| Q |
113 |
agtccttttcatttttcacgccatcatcgttgatgtggagaacggggagtgagtggcacaattgaacccatctctttgaaagaagggttgtcctgaaagc |
212 |
Q |
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| T |
15783833 |
agtccttttcatttttcacgccatcatcgttgatgtggagaacggggagtgagcggcacaatagaacccatctctttgaaagaagggttgtcctgaaagc |
15783734 |
T |
|
| Q |
213 |
atctttgatcggtagaaaagagattatatgagttagtatatcgtcgtggaaatcgttgatggtgttggtagtattcttcctcttactgttattttcgttt |
312 |
Q |
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| T |
15783733 |
atctttgatcggtagaaaagagattatatgagttagtatatcgtcgtggaaatcgttgatggtgttggtagtattcttcctcttactattattttcgttt |
15783634 |
T |
|
| Q |
313 |
tccatgaatggcttctgtgtagaacaatgtatatctcttggttaaagttaatt--aacacaaaattttggcct-gttttaac |
391 |
Q |
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| T |
15783633 |
tccatgaatggcttctgtgtagaacaatgtatatctcttggttcaagttaattcgaacccaaaattttgccctagttttaac |
15783552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 272
Target Start/End: Original strand, 19970455 - 19970664
Alignment:
| Q |
63 |
agagcgtggggaaaacataacggcatccaacatttgacgaaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggagt |
162 |
Q |
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| T |
19970455 |
agagcgtggggagaacataacggcattcaacatttgatggaactgaatctgttcctttacattgttcacgtctttattgtcgaagtggagaatcgggagt |
19970554 |
T |
|
| Q |
163 |
gagtggcacaattgaacccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtgga |
262 |
Q |
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|||| ||||||| ||||| |||| ||||| | ||| || |||||||| ||| |||| || |||||||||| || ||||||||||||||||| ||| |
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| T |
19970555 |
gagtagcacaatgagacccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagttagtatatcgtctggga |
19970654 |
T |
|
| Q |
263 |
aatcgttgat |
272 |
Q |
| |
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| T |
19970655 |
agtcgttgat |
19970664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 257
Target Start/End: Original strand, 1348708 - 1348879
Alignment:
| Q |
86 |
catccaacatttgacgaaactgaatcaagtccttttcatttttcacgccatcatcgttgatgtggagaacggggagtgagtggcacaattgaacccatct |
185 |
Q |
| |
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||||||||||||||||||| |||||| | |||||| | |||||||| | | |||| ||||||| ||| || |||| |||| | ||| | | |||||| |
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| T |
1348708 |
catccaacatttgacgaaagtgaatccaatcctttccgtttttcacttctttgtcgtcgatgtggggaatcggaagtgtgtggaataatgggaaccatct |
1348807 |
T |
|
| Q |
186 |
ctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtc |
257 |
Q |
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||| ||||||| ||| || |||||||| ||||||| | ||||||||||| || ||||||||||| ||||| |
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| T |
1348808 |
cttagaaagaatggtagttctgaaagcgtctttgaatgtgagaaaagagataatgtgagttagtatctcgtc |
1348879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 272
Target Start/End: Complemental strand, 20110938 - 20110844
Alignment:
| Q |
178 |
acccatctctttgaaagaagggttgtcctgaaagcatctttgatcggtagaaaagagattatatgagttagtatatcgtcgtggaaatcgttgat |
272 |
Q |
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|||||| ||||||| |||| ||| || ||||||| ||||||| || |||||||||| || ||||||||||||||||| |||| |||||||| |
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| T |
20110938 |
acccatttctttgagagaacggtggttttgaaagcgtctttgaatggaagaaaagagacgatgtgagttagtatatcgtctgggaagtcgttgat |
20110844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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