View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_high_25 (Length: 370)
Name: NF0095_high_25
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 43 - 370
Target Start/End: Original strand, 19755198 - 19755525
Alignment:
| Q |
43 |
catcatcagagttcaacccacgaggttctttactttttccaccttcgaccggagatggacccccttcattttcttcataaatgtgttgttgatcatcttc |
142 |
Q |
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| T |
19755198 |
catcttcagagttcaacccacgaggttctttactttttccactttcgaccagagatggacccccttcattttcttcatcaatgtgttgttgatcatcttc |
19755297 |
T |
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| Q |
143 |
aacacttttagcattcaaatcttgaggaggagcagagagcattttctctcggtcttcatcatctttgggaggactagagtcaactatcatattgtcctca |
242 |
Q |
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| T |
19755298 |
aacacttttatcattcaaatcttgaggaggttcagaaagcattttctctgggtcttcatcatctttgggaggactagagtcaattatcatattgtcctca |
19755397 |
T |
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| Q |
243 |
aagatggggtcaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcattgctaactttagcacccttaaacacataaaaaagtc |
342 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |
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| T |
19755398 |
aagatggggttaattgactggttaaaagtggaaggaggtgtttgttgcttgcccgtttcggcattgctaacttcagcaccctgaaacacattaaaaagtc |
19755497 |
T |
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| Q |
343 |
gaagtaaataaagaaggcttgttaaaga |
370 |
Q |
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||||| ||||||||||| |||||||||| |
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| T |
19755498 |
gaagttaataaagaaggtttgttaaaga |
19755525 |
T |
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