View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_high_53 (Length: 251)
Name: NF0095_high_53
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_high_53 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 47064592 - 47064371
Alignment:
| Q |
1 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47064592 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
47064493 |
T |
|
| Q |
101 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47064492 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
47064393 |
T |
|
| Q |
201 |
aatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47064392 |
aatgtgaaaactatgcaaaatc |
47064371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 53301876 - 53302097
Alignment:
| Q |
1 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53301876 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
53301975 |
T |
|
| Q |
101 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
53301976 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
53302075 |
T |
|
| Q |
201 |
aatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
53302076 |
aatgtgaaaactatgcaaaatc |
53302097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 9764872 - 9764925
Alignment:
| Q |
45 |
tcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacaca |
98 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||| | || |||||||||||| |
|
|
| T |
9764872 |
tcctatgcaacggaaaggttatacacacataaatcaacaaagcaactaaacaca |
9764925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 30268550 - 30268771
Alignment:
| Q |
1 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30268550 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
30268649 |
T |
|
| Q |
101 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30268650 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactagttatcata |
30268749 |
T |
|
| Q |
201 |
aatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30268750 |
aatgtgaaaactatgcaaaatc |
30268771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 31332481 - 31332373
Alignment:
| Q |
8 |
gtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacataaattgcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
31332481 |
gtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcagccaaacaactaaacacatacattgcc |
31332382 |
T |
|
| Q |
108 |
aagtaaact |
116 |
Q |
| |
|
|||| |||| |
|
|
| T |
31332381 |
aagtgaact |
31332373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 31339211 - 31339103
Alignment:
| Q |
8 |
gtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacataaattgcc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
31339211 |
gtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcagccaaacaactaaacacatacattgcc |
31339112 |
T |
|
| Q |
108 |
aagtaaact |
116 |
Q |
| |
|
|||| |||| |
|
|
| T |
31339111 |
aagtgaact |
31339103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 7404657 - 7404436
Alignment:
| Q |
1 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
7404657 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcagccaaacaactaaacacata |
7404558 |
T |
|
| Q |
101 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactag-ttatcat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
7404557 |
cattgccaagtaaactaatctgaaaggttagctttcatactgtttgttcaa-tctgaatttctcatgccaaattgcagcattatagaactagataatcat |
7404459 |
T |
|
| Q |
200 |
aaatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7404458 |
aaatgtgaaaactatgcaaaatc |
7404436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25640503 - 25640724
Alignment:
| Q |
1 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25640503 |
tccttgtgtttttatattgcttcaaacatgaaaagttacatttctcctatgcaatgggaagcttatacacacataaatcagccaaacaactaaacacata |
25640602 |
T |
|
| Q |
101 |
aattgccaagtaaactaatctgaaaggttagctttcacactgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactag-ttatcat |
199 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | ||||| |
|
|
| T |
25640603 |
cattgccaagtaaactaatcttaaaggttagctttcatactgtttgttcaa-tctaaatttctcatgccaaattgcagcgttatagaactagataatcat |
25640701 |
T |
|
| Q |
200 |
aaatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25640702 |
aaatgtgaaaactatgcaaaatc |
25640724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 4683517 - 4683435
Alignment:
| Q |
140 |
ctgtttgttcaattctaaatttctcatgccaaattgcagcattatagaactag-ttatcataaatgtgaaaactatgcaaaatc |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
4683517 |
ctgtttgttcaat-ctaaatttctcatgccaaattgcagcgttatagaactagataatcataaatgtgaaaactatgcaaaatc |
4683435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 6761486 - 6761518
Alignment:
| Q |
68 |
cacacataaatcatccaaacaactaaacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
6761486 |
cacacataaatcatccaaacaactaatcacata |
6761518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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