View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_low_10 (Length: 505)
Name: NF0095_low_10
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_10 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 73 - 496
Target Start/End: Complemental strand, 43071203 - 43070778
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071203 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
43071104 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
43071103 |
tgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggca |
43071004 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43071003 |
tcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
43070904 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatc--atgtgtannnnnnnn |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43070903 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtatttttttt |
43070804 |
T |
|
| Q |
471 |
caaacacaccaatatgtccattgatg |
496 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43070803 |
caaacacaccaatatgtccattgatg |
43070778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 73 - 285
Target Start/End: Original strand, 1262389 - 1262601
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||||||||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262389 |
ttatgtgttggaattcatattgcttttactcgaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
1262488 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||| |
|
|
| T |
1262489 |
tgccgttgccgctttctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtatgcggca |
1262588 |
T |
|
| Q |
273 |
tcgtattagccag |
285 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
1262589 |
tcgtatcagccag |
1262601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 91 - 285
Target Start/End: Complemental strand, 48849585 - 48849391
Alignment:
| Q |
91 |
attgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctctgccgttgccgctctctc |
190 |
Q |
| |
|
|||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48849585 |
attgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctctgccgttgccgctttctc |
48849486 |
T |
|
| Q |
191 |
tgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggcatcgtattagccag |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
48849485 |
cgtcgccgcagctctctcctttcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggcatcgtatcagccag |
48849391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 48849627 - 48849586
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctc |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
48849627 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctc |
48849586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 73 - 461
Target Start/End: Complemental strand, 23348801 - 23348413
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23348801 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
23348702 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
23348701 |
tgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggca |
23348602 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23348601 |
tcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
23348502 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
23348501 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt |
23348413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 73 - 457
Target Start/End: Original strand, 12741988 - 12742372
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12741988 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
12742087 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
12742088 |
tgccgttgccgctctctccgccgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggca |
12742187 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12742188 |
tcgtatcagcaaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
12742287 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12742288 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
12742372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 73 - 496
Target Start/End: Complemental strand, 18355134 - 18354703
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
18355134 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccatctcactctcagacattcaaacaaaattctc |
18355035 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||| |
|
|
| T |
18355034 |
tgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgctgttgttgtctgcggcg |
18354935 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatat------atatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttt |
366 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18354934 |
tcgtatcagtcaggtgtgttgaagatgctactatatatatatatatcctaaatcgttgttcctgtagcttttccctaactttgttattccattacatttt |
18354835 |
T |
|
| Q |
367 |
tggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatc--atgtgtann |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18354834 |
tggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtatt |
18354735 |
T |
|
| Q |
465 |
nnnnnncaaacacaccaatatgtccattgatg |
496 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
18354734 |
ttttttcaaacacaccaatatgtccattgatg |
18354703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 294 - 496
Target Start/End: Complemental strand, 10328627 - 10328422
Alignment:
| Q |
294 |
aagatgctactatatatat--cctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatg |
391 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10328627 |
aagatgctactatatatatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatg |
10328528 |
T |
|
| Q |
392 |
atatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta-nnnnnnnncaaacacaccaatatgtcca |
490 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10328527 |
atatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttcaaacacaccaatatgtcca |
10328428 |
T |
|
| Q |
491 |
ttgatg |
496 |
Q |
| |
|
|||||| |
|
|
| T |
10328427 |
ttgatg |
10328422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 10328718 - 10328626
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaa |
165 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10328718 |
ttatgtgttggaatttagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaa |
10328626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 73 - 496
Target Start/End: Original strand, 954 - 1378
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
954 |
ttatgtgttggaattcaaattgcttttactcaaaaaaatctcttctccctttgagttgttcatcttccacctcactctcagacatttaaacaaaattctc |
1053 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| |
|
|
| T |
1054 |
tgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgccgttgtcgtctgcggca |
1153 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1154 |
tcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
1253 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta-nnnnnnnnc |
471 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| | |
|
|
| T |
1254 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgtgtatttttttttc |
1353 |
T |
|
| Q |
472 |
aaacacaccaatatgtccattgatg |
496 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1354 |
aaacacaccaatatgtccattgatg |
1378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 73 - 461
Target Start/End: Complemental strand, 19881932 - 19881544
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19881932 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
19881833 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| ||||||||||||||| ||| |||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
19881832 |
tgtcgttgccgctctctccgtcaccgcagctctctcctgtcctcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggca |
19881733 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19881732 |
tcgtatcagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
19881633 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19881632 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt |
19881544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 73 - 496
Target Start/End: Complemental strand, 53973107 - 53972682
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
53973107 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttctccctttgagttgttcatcttccacctcactctcagacatttaaacaaaattctc |
53973008 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||| |
|
|
| T |
53973007 |
tgtcgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcactttcgtcgttgtcgtctgcggca |
53972908 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
53972907 |
tcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
53972808 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta--nnnnnnnn |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53972807 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgtatttttttttt |
53972708 |
T |
|
| Q |
471 |
caaacacaccaatatgtccattgatg |
496 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
53972707 |
caaacacaccaatatgtccattgatg |
53972682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 37982652 - 37982891
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982652 |
ttatgttttggaattcagattgcttttactcaaaaaaatctcttcgccctctgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
37982751 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
37982752 |
tgtcgttgccgctctctccgtcgccgcagctctctcctatcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggca |
37982851 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatat |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
37982852 |
tcgtatcagccaggtgtgttgaagatgctaatatatatat |
37982891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 304 - 462
Target Start/End: Original strand, 37982939 - 37983097
Alignment:
| Q |
304 |
tatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatag |
403 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37982939 |
tatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatag |
37983038 |
T |
|
| Q |
404 |
attttaccatcatgtattatgctattaataaattgattgatactttaaaatcatgtgta |
462 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37983039 |
attttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta |
37983097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 73 - 285
Target Start/End: Original strand, 31685377 - 31685575
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaat-tctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattct |
171 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
31685377 |
ttatgtgttggaattcaaattgcttttactcaaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattat |
31685476 |
T |
|
| Q |
172 |
ctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggc |
271 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
31685477 |
atgccgtt---------------gccgcagctctctcctgtcgtcgcccttcaccaatgatatcgattccgacatcaccttcgccgttgtcgtctgcggc |
31685561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 43806781 - 43806836
Alignment:
| Q |
29 |
agatgtgacgcagaattgcttgttttcttcattggtatgatatattatgtgttgga |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
43806781 |
agatgtgacgcagaattgcttgttttcttcattggtatgatataatatgttttgga |
43806836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 17682201 - 17682246
Alignment:
| Q |
218 |
cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg |
263 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||| | |||||||| |
|
|
| T |
17682201 |
cccttcaccaatgctctcgattccgacatcacctttgccgttgtcg |
17682246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 19766443 - 19766488
Alignment:
| Q |
218 |
cccttcaccaatgctctcgattctgacttcaccttcgacgttgtcg |
263 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
19766443 |
cccttcaccaatgctctagattccgacatcaccttcgccgttgtcg |
19766488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 73 - 457
Target Start/End: Original strand, 9044102 - 9044486
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9044102 |
ttatgtgttggaattcagattgcttttactcaaaaaaatttcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
9044201 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||| |
|
|
| T |
9044202 |
tgccgttgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgatttcgacatcaccttcgtcgttgtcgtctgcagca |
9044301 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggttt |
372 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9044302 |
tcgtatcagccaagtgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggttt |
9044401 |
T |
|
| Q |
373 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9044402 |
gtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
9044486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 73 - 457
Target Start/End: Complemental strand, 7473310 - 7472922
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||||||||||||| |||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7473310 |
ttatgtgttggaatttagattgcttttactcaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
7473211 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
7473210 |
tgccgttgtcgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcggca |
7473111 |
T |
|
| Q |
273 |
tcgtattagccaggtgtgttgaagatgctactatat----atatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttg |
368 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7473110 |
tcgtatcagccaggtgtgttgaagatgctactatatatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttg |
7473011 |
T |
|
| Q |
369 |
gtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7473010 |
gtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat |
7472922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 73 - 457
Target Start/End: Complemental strand, 30442368 - 30441983
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaat-tctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattct |
171 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30442368 |
ttatgtgttggaattcagattgcttttactcaaaaaaaatctcttcgccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattct |
30442269 |
T |
|
| Q |
172 |
ctgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggc |
271 |
Q |
| |
|
||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||| |
|
|
| T |
30442268 |
ctgtcgttgccgctctctccgttgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttggccgttgtcgtctgcggc |
30442169 |
T |
|
| Q |
272 |
atcgtattagccaggtgtgttgaagatgctactatatatatcctaaatcgttgttcttgtaacttttccctaactttgttattccattatatttttggtt |
371 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30442168 |
atcgtatcagccatatgtgttgaagatgctactatatatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtt |
30442069 |
T |
|
| Q |
372 |
tgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctattaataaattgattgatactttaaaatcat |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
30442068 |
tgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcat |
30441983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
| Q |
341 |
ctaactttgttattccattatatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat |
423 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| | |||||| ||||||||| ||||||||||| || ||||||||| |
|
|
| T |
40163917 |
ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat |
40163996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 73 - 286
Target Start/End: Complemental strand, 14677843 - 14677630
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14677843 |
ttatgtgttgaaattcagattgcttttactcaaaaaaatctctttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaatcctc |
14677744 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||| |
|
|
| T |
14677743 |
tgccgttgccgctctctccgtcgccgcagctctctcctatcgtcacccttcaccaatgctctcgattccgacatcaccttcgccgttgtcgtctgcagca |
14677644 |
T |
|
| Q |
273 |
tcgtattagccagg |
286 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
14677643 |
tcgtatcagccagg |
14677630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 31100693 - 31100488
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
31100693 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctt |
31100594 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| |||| |
|
|
| T |
31100593 |
tgccgtcgccactctctccgtcgccgcaactctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgccgttgtcgtctgtggca |
31100494 |
T |
|
| Q |
273 |
tcgtat |
278 |
Q |
| |
|
|||||| |
|
|
| T |
31100493 |
tcgtat |
31100488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 73 - 278
Target Start/End: Original strand, 5658071 - 5658261
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5658071 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctt |
5658170 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||||||||||| |||| |
|
|
| T |
5658171 |
tgcc---------------gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctcttgattccaacatcaccttcgccgttgtcgtctgtggca |
5658255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 80 - 214
Target Start/End: Complemental strand, 33689112 - 33688978
Alignment:
| Q |
80 |
ttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaa-aattctctgccgt |
178 |
Q |
| |
|
||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| | |||||| || | |
|
|
| T |
33689112 |
ttggaattcagattgcttttactcaaaaaaatctcttc-ccctttgagttgttcatcttccacctcactcttagacattcaaacaagacttctctcccat |
33689014 |
T |
|
| Q |
179 |
tgccgctctctctgtcgccgcagctctctcctgtcg |
214 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
33689013 |
cgccgctctctccgtcgccgcagctctctcatgtcg |
33688978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 35361 - 35574
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||| || || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35361 |
ttatgagttggaattcagattgcttttactcaaaaaaatcgttttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
35460 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
35461 |
tgccgttgctgctctctccgtcgccgcagctctctcctgtcgtcgcctttgaccgatgctctcgattctgacatcaccttcgccgttgtcgtttgcggca |
35560 |
T |
|
| Q |
273 |
tcgtattagccagg |
286 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
35561 |
tcgtatcagccagg |
35574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 73 - 286
Target Start/End: Complemental strand, 29863182 - 29862969
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||||||| |||||||||||| ||| |||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29863182 |
ttatgtgttagaattcagattgcttttactcaaaaaaatctctttcccctttgagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
29863083 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| || |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| || | ||||||| ||||||||| |
|
|
| T |
29863082 |
tgtcgctgccgctctctccgtcgccgcagctctctcctgtcgtcgcccttcaccgatgctctcgattccgacatcacttttgccgttgtcatctgcggca |
29862983 |
T |
|
| Q |
273 |
tcgtattagccagg |
286 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
29862982 |
tcgtatcagccagg |
29862969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 73 - 286
Target Start/End: Complemental strand, 11455 - 11242
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| || || |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
11455 |
ttatgtgttggaattcagattgcttttactcaaacaaatcccttccccctttgagttgttcatcttccacctcactcccagacattcaaacaaaattctt |
11356 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||||||| |
|
|
| T |
11355 |
tgttgtcaccgctctctccgtcgccgcagctctctcttgtcgtcgcccttcaccaatgctctcgaatccgacatcaccttcgccgttgtcgtctgcggca |
11256 |
T |
|
| Q |
273 |
tcgtattagccagg |
286 |
Q |
| |
|
| | || ||||||| |
|
|
| T |
11255 |
ttgcatcagccagg |
11242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 33045252 - 33045062
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
33045252 |
ttatgtgttggaattcagattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttcaacctcactctcagacattcaaacaaaattctt |
33045153 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
33045152 |
tgtc---------------gtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattccaacatcaccttcgtcgttgtcgtctgcggca |
33045068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 22001126 - 22000988
Alignment:
| Q |
81 |
tggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctctgccgttg |
180 |
Q |
| |
|
||||||| | |||| ||| |||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
22001126 |
tggaatttatattgcttttactcaaaaaaatctcttccccctttgagttgttcatcttccacctcactttcagacattcaaacaaaattctctgtcgttg |
22001027 |
T |
|
| Q |
181 |
ccgctctctctgtcgccgcagctctctcctgtcgtcgcc |
219 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
22001026 |
ccgctctctccgtcgccgcagctctctcctgtcgtcgcc |
22000988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 10092793 - 10092985
Alignment:
| Q |
73 |
ttatgtgttggaattcagattgttttaactcaaaaaattctcttcgccctttgagttgttcatcctccacctcactctcagacattcaaacaaaattctc |
172 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10092793 |
ttatgtgttggaattcaaattgcttttactcaaaaaaatctcttc--cctttaagttgttcatcttccacctcactctcagacattcaaacaaaattctc |
10092890 |
T |
|
| Q |
173 |
tgccgttgccgctctctctgtcgccgcagctctctcctgtcgtcgcccttcaccaatgctctcgattctgacttcaccttcgacgttgtcgtctgcggca |
272 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
10092891 |
taacgtcgccgctctct-------------------ctgtcgtcgcccttcaccaatgctctcgattccgacatcaccttcgtcgttgtcgtctgcggca |
10092971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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