View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_15 (Length: 481)
Name: NF0095_low_15
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 221 - 324
Target Start/End: Complemental strand, 49032871 - 49032768
Alignment:
| Q |
221 |
gatgattgtttagttgtttggtagggatgaaagtgaagaggaaagaaagagatataaatagtaaatgacaaaaataccctaatataaaaatgatttatgt |
320 |
Q |
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| T |
49032871 |
gatgattgtttagttgtttggtaggggtgaaagtgaagaggaaagaaagatatataaatagtaaatgacaaaaataccctaatataaaagtgatttgtgt |
49032772 |
T |
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| Q |
321 |
gtgt |
324 |
Q |
| |
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|||| |
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| T |
49032771 |
gtgt |
49032768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 405 - 466
Target Start/End: Complemental strand, 49032685 - 49032624
Alignment:
| Q |
405 |
gtaaaggaaatacaaacattagattatttcaaataaaggaacacaaacgttaaaagaaatat |
466 |
Q |
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| T |
49032685 |
gtaaaggaaatacaaacattggattatttcaaataaaggaacacaaacgttaaaagaaatat |
49032624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 473
Target Start/End: Complemental strand, 41055095 - 41055024
Alignment:
| Q |
405 |
gtaaaggaaatacaaacattagattatttcaaat-aaaggaacacaaacgttaaaa--gaaatattcatctc |
473 |
Q |
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| T |
41055095 |
gtaaaggaagtaaaaacgttagattatttcaaataaaaaaaacacaaacgttaaaaatgaaatatttatctc |
41055024 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 473
Target Start/End: Original strand, 42640418 - 42640489
Alignment:
| Q |
405 |
gtaaaggaaatacaaacattagattatttcaaat-aaaggaacacaaacgttaaaa--gaaatattcatctc |
473 |
Q |
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| T |
42640418 |
gtaaaggaagtaaaaacgttagattatttcaaataaaagaaacacaaacgttaaaaatgaaatatttatctc |
42640489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 43849846 - 43849880
Alignment:
| Q |
86 |
gaacaacgactcgaacaccattgactatgccaact |
120 |
Q |
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| T |
43849846 |
gaacaacgactcgaacaccattgactatgtcaact |
43849880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 300
Target Start/End: Complemental strand, 30514673 - 30514632
Alignment:
| Q |
259 |
aggaaagaaagagatataaatagtaaatgacaaaaataccct |
300 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||| |
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| T |
30514673 |
aggaaagaaagatatatatttagtaaatgacaaaaataccct |
30514632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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