View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_20 (Length: 469)
Name: NF0095_low_20
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 13726433 - 13726690
Alignment:
| Q |
7 |
agcatagggtttatgtggccttgtaatggatacggtaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctctt |
106 |
Q |
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| T |
13726433 |
agcatagggtttatgtgaccttgtaatggatatggaaacactaagatgtgtggtgcatgttttttgcttttattctccattgatttttgtggtgtctctt |
13726532 |
T |
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| Q |
107 |
ttcttctggaatgtgtttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaagca |
206 |
Q |
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| T |
13726533 |
ttcttctggaatgtgtttatatatgaagaagggtgtaaaagtaatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaagca |
13726632 |
T |
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| Q |
207 |
tcaattgattgtgacctttccatgtaggatttagaccttttcctaatgtggtgtggca |
264 |
Q |
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| T |
13726633 |
tcaagtgattgtgacctttccatgtaggattttgaccttttcctaatgtggtgtggca |
13726690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 304 - 440
Target Start/End: Original strand, 13726980 - 13727118
Alignment:
| Q |
304 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
402 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
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| Q |
403 |
ttctcaaaaa-tatggggacaagaccaagaacaggtcgc |
440 |
Q |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgc |
13727118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 435
Target Start/End: Original strand, 49525056 - 49525106
Alignment:
| Q |
385 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacag |
435 |
Q |
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| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacag |
49525106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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