View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_22 (Length: 453)
Name: NF0095_low_22
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 28 - 424
Target Start/End: Complemental strand, 34845057 - 34844661
Alignment:
| Q |
28 |
cactaattaacttaatcttttctcataagcaacttgttgatgttgaagatgatgaagagtgaaaattaagaattgacaaaactcgtatataaattatttc |
127 |
Q |
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| T |
34845057 |
cactaattaacttaatcttttatcataagcaacttgttgatgttgaagatgatgaagagtgaaaattaagaattgacaaaactcgtatataaattatttc |
34844958 |
T |
|
| Q |
128 |
attgattgtaatagagaagagaaactgccttctaagtttaatatatagaacaacattgaagttgactaaaaaacactgaaaacaataagggaattaacta |
227 |
Q |
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| T |
34844957 |
attgattgtgatagagaagagaaactgccttctaagttttatatatagaacaacattgaagttgactaaaaaacactgaaaacaataagggaattaacta |
34844858 |
T |
|
| Q |
228 |
ttaagtaaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagcttaagcaagttaataaactacttcccatatttgtaggaaag |
327 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34844857 |
ttaattaaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagcttaagcaagttaataaactacttcccatatttgtaggaaag |
34844758 |
T |
|
| Q |
328 |
tcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcatagaaccacgataaataaatgtaatagcttcattcacaagttaat |
424 |
Q |
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| T |
34844757 |
tcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcatagaaccacaataaataaatgtaatagcttcattcacaagttaat |
34844661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 21776953 - 21777014
Alignment:
| Q |
320 |
taggaaagtcagttatcatcctatgagattgagttcatagtagtttatcatgttctctcata |
381 |
Q |
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| T |
21776953 |
taggaaagttagttatcatcctatgagatagagttcttagtagcttatcatactctctcata |
21777014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 21776849 - 21776903
Alignment:
| Q |
233 |
taaggaagaagaacaccatagacaacacttacttgcaacacaagctatcaaagct |
287 |
Q |
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|||||||||||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
21776849 |
taaggaagaagaacaccatacatctcaattacttgcaacacaagctatcaaagct |
21776903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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