View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_54 (Length: 296)
Name: NF0095_low_54
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 1495234 - 1495013
Alignment:
| Q |
20 |
atgagattgaattctgtcactgctaaataatt-cttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggactt |
118 |
Q |
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||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1495234 |
atgagattgaattctgtgactgataaataatttcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggactt |
1495135 |
T |
|
| Q |
119 |
gacactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1495134 |
gacactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacagttgaagcaatataaccattcat |
1495035 |
T |
|
| Q |
219 |
gaacaaaattctttcacaggtt |
240 |
Q |
| |
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|||||||||||||||| ||||| |
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| T |
1495034 |
gaacaaaattctttcaaaggtt |
1495013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 1516798 - 1516584
Alignment:
| Q |
20 |
atgagattgaattctgtcactgctaaataattcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggacttg |
119 |
Q |
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||||||||||| |||| |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||||||| || |
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| T |
1516798 |
atgagattgaagtctgccactgctaaatatttcttctaccagcgatggtctgaaattgaagtaaatcttattaatatatatttcaagttaataggacatg |
1516699 |
T |
|
| Q |
120 |
acactttttcggt-------attacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataacc |
212 |
Q |
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|||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||||||||| |
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| T |
1516698 |
acactttttctgtattttggattacattggaaaattgcaatggttaaaagagacattttagagaaaaggtgtagtgctttagaaatgacgcaatataacc |
1516599 |
T |
|
| Q |
213 |
attcatgaacaaaat |
227 |
Q |
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||||||||||||||| |
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| T |
1516598 |
attcatgaacaaaat |
1516584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 1533289 - 1533137
Alignment:
| Q |
20 |
atgagattgaattctgtcactgctaaataattcttctaccagcgatgatctgaaattgaagtgaatcttatttatatatatttcacgttaataggacttg |
119 |
Q |
| |
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||||||||||| |||| |||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
1533289 |
atgagattgaagtctgccactgctaaatatttcttctaccagcgatggtctaaaattgaagtgaatcttatttatatatatttcaagttaa--------- |
1533199 |
T |
|
| Q |
120 |
acactttttcggtattacattggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaa |
186 |
Q |
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| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
1533198 |
--agtttt---ggattacattggaaagttgcaatggttaaaagagacctattagagaaaaggtgtaa |
1533137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 48780202 - 48780120
Alignment:
| Q |
139 |
ttggaaagttgcaatggttaaaagagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa |
221 |
Q |
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|||||||||||||||| ||||| ||| | |||||||||||||| ||| | || || ||||||||||||||| ||||||||| |
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| T |
48780202 |
ttggaaagttgcaatgattaaacaagatcttttagagaaaaggtataatgtttgacaattgaagcaatataactattcatgaa |
48780120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 12729166 - 12729253
Alignment:
| Q |
139 |
ttggaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa |
225 |
Q |
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|
|||||||||||||||||||||| ||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||| |||| |
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| T |
12729166 |
ttggaaagttgcaatggttaaatagagaccttttagagaaaaggtgtaatgctcgacaattgaagcaatataaccattcatgagcaaa |
12729253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 28696421 - 28696338
Alignment:
| Q |
143 |
aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa |
225 |
Q |
| |
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||||||||||||| |||| ||||| | ||||||||||| |||||| |||| || |||||||||| |||||||||||||||||| |
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| T |
28696421 |
aaagttgcaatgggtaaatagagatcttttagagaaaatgtgtaatgcttaacaattgaagcaatgtaaccattcatgaacaaa |
28696338 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 225
Target Start/End: Original strand, 36202895 - 36202978
Alignment:
| Q |
143 |
aaagttgcaatggttaaaa-gagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa |
225 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||| |||| || ||||| |||| |||||||||||||||||| |
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| T |
36202895 |
aaagttgcaatggttaaaaagagaccttttagagaaaaggtgtaatgcttgacaattgaatcaatgtaaccattcatgaacaaa |
36202978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 227
Target Start/End: Original strand, 29006244 - 29006336
Alignment:
| Q |
138 |
attggaaagttgcaatggttaaaagagaccatttagagaaaag---gtgtaaagctttacggttgaagcaatataaccattcatgaacaaaat |
227 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||||| |||| |||||| | |||||| |||||||||| |||||||||||||||||||| |
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| T |
29006244 |
attgaaaagttgcaataattaaaagagatcttttagaaaaaaaaaagtgtaatgttttacgattgaagcaatgtaaccattcatgaacaaaat |
29006336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 50914746 - 50914667
Alignment:
| Q |
143 |
aaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaa |
221 |
Q |
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|
|||||||||||||||||| ||||||| ||||||| |||||||||| |||| || |||||||||| ||||||||||||| |
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|
| T |
50914746 |
aaagttgcaatggttaaatagagaccttttagagtaaaggtgtaatgcttgacaattgaagcaatgcaaccattcatgaa |
50914667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 33709598 - 33709667
Alignment:
| Q |
139 |
ttggaaagttgcaatggttaaaagagaccatt--tagagaaaaggtgtaaagctttacggttgaagcaat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||| || || | ||||||||||| ||||||| |||||||||| |
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| T |
33709598 |
ttggaaagttgcaatggttaaaagagaccttttataaaaaaaaggtgtaatgctttacaattgaagcaat |
33709667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 12239961 - 12239877
Alignment:
| Q |
142 |
gaaagttgcaatggttaaa-agagaccatttagagaaaaggtgtaaagctttacggttgaagcaatataaccattcatgaacaaa |
225 |
Q |
| |
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||||||||||||||||||| | ||||| ||||| ||||| ||||| |||| || |||| ||||| |||||||||||||||||| |
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| T |
12239961 |
gaaagttgcaatggttaaagaaagaccttttagtgaaaaagtgtattgcttgacaattgatgcaatgtaaccattcatgaacaaa |
12239877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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