View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0095_low_59 (Length: 279)
Name: NF0095_low_59
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 20874528 - 20874592
Alignment:
| Q |
146 |
ggtgtgtttgagcatttgtaatcttagtaactatagtgaacatcccttggaagtgaaagggaacta |
211 |
Q |
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| T |
20874528 |
ggtgtgtttgagcatttgtaatcttagt-actatagtgaacatctcttggaaacgaaagggaacta |
20874592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 20874480 - 20874527
Alignment:
| Q |
54 |
tgatgaggagactttgacagtcctgcgggaatggattcaacatgagcc |
101 |
Q |
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| T |
20874480 |
tgatgaggagactttcacagttctgcgggaatggattcaacatgagcc |
20874527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 20311305 - 20311205
Alignment:
| Q |
147 |
gtgtgtttgagcatttgtaatc-ttagtaactatagtgaacatcccttggaagtgaaagggaactatactattctcgatttgggagaggaactggtataa |
245 |
Q |
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| T |
20311305 |
gtgtgtttgggcatttgtaatctttaatgattatagtgaaaattcattgaaagtgcaaggggactatactactctcgatttgtaaggggaactagtataa |
20311206 |
T |
|
| Q |
246 |
a |
246 |
Q |
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| T |
20311205 |
a |
20311205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 21104942 - 21104842
Alignment:
| Q |
147 |
gtgtgtttgagcatttgtaatc-ttagtaactatagtgaacatcccttggaagtgaaagggaactatactattctcgatttgggagaggaactggtataa |
245 |
Q |
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| T |
21104942 |
gtgtgtttgggcatttgtaatctttaatgattatagtgaaaattcattgaaagtgcaaggggactatactactctcgatttgtaaggggaactagtataa |
21104843 |
T |
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| Q |
246 |
a |
246 |
Q |
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| T |
21104842 |
a |
21104842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 30497529 - 30497471
Alignment:
| Q |
147 |
gtgtgtttgagcatttgtaatcttagtaactatagtgaacatcccttggaagtgaaagg |
205 |
Q |
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| T |
30497529 |
gtgtgcttgagcatttgtaatctttttaattatagtgaaaatctcttggaagtgaaagg |
30497471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 11104911 - 11104875
Alignment:
| Q |
149 |
gtgtttgagcatttgtaatcttagtaactatagtgaa |
185 |
Q |
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| T |
11104911 |
gtgtttgaacatttgtaatcttagtaattatagtgaa |
11104875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 5290753 - 5290821
Alignment:
| Q |
177 |
tatagtgaacatcccttggaagtgaaagggaactatactattctcgatttgggagaggaactggtataa |
245 |
Q |
| |
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| T |
5290753 |
tatagtgaacatcccttagaagtgcaaggggactggactactctcgatttgtgggaggaactagtataa |
5290821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 238
Target Start/End: Original strand, 13977908 - 13977999
Alignment:
| Q |
147 |
gtgtgtttgagcatttgtaatc-ttagtaactatagtgaacatcccttggaagtgaaagggaactatactattctcgatttgggagaggaact |
238 |
Q |
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| T |
13977908 |
gtgtgcttgagcatttgtaatctttagtgattatagtgaaaattcctt-gaagtgcaaggggactagactactctcggtttgtgagaggaact |
13977999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 19903133 - 19903035
Alignment:
| Q |
147 |
gtgtgtttgagcatttgtaatcttagtaactatagtgaacatcccttggaagtgaaagggaactatactattctcgatttgggagaggaactggtataaa |
246 |
Q |
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||||| ||||||||||||||||||||| |||| |||| |||| || |||||| |||| |||| |||| ||||| |||| |||||||||| ||||||| |
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| T |
19903133 |
gtgtgcttgagcatttgtaatcttagtgtttatattgaaaatccttttgaagtgccaggg-actagactactctcggtttgtgagaggaactagtataaa |
19903035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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