View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0095_low_78 (Length: 228)

Name: NF0095_low_78
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0095_low_78
NF0095_low_78
[»] chr3 (3 HSPs)
chr3 (1-97)||(37983001-37983097)
chr3 (1-97)||(53972718-53972814)
chr3 (1-96)||(19881544-19881639)
[»] chr2 (4 HSPs)
chr2 (1-97)||(10328457-10328553)
chr2 (1-96)||(23348413-23348508)
chr2 (1-92)||(12742281-12742372)
chr2 (1-131)||(18354703-18354835)
[»] chr5 (3 HSPs)
chr5 (1-92)||(30441983-30442074)
chr5 (1-92)||(7472922-7473013)
chr5 (1-92)||(9044395-9044486)
[»] scaffold0596 (1 HSPs)
scaffold0596 (1-97)||(1247-1343)
[»] chr7 (1 HSPs)
chr7 (1-131)||(43070778-43070910)


Alignment Details
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 37983001 - 37983097
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgta 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37983001 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 37983097  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 53972814 - 53972718
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgta 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  53972814 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 53972718  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 19881639 - 19881544
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  19881639 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt 19881544  T

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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 10328553 - 10328457
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgta 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  10328553 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgta 10328457  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 23348508 - 23348413
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  23348508 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgt 23348413  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 12742281 - 12742372
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  12742281 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 12742372  T

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Target: chr2; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18354835 - 18354703
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--atgtgtan 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||  |||||||     
T  18354835 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtat 18354736  T
Q  99 nnnnnnncaaacacaccaatatgcccattgatg 131  Q
           |||||||||||||||| |||||||||    
T  18354735 tttttttcaaacacaccaatatgtccattgatg 18354703  T

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Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 30442074 - 30441983
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30442074 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcat 30441983  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7473013 - 7472922
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7473013 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 7472922  T

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Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9044395 - 9044486
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcat 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  9044395 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcat 9044486  T

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Target: scaffold0596 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 1247 - 1343
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgtgta 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||    
T  1247 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgtgta 1343  T

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Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 43070910 - 43070778
Alignment:
Q  1 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--atgtgtan 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||  |||||||     
T  43070910 ttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtat 43070811  T
Q  99 nnnnnnncaaacacaccaatatgcccattgatg 131  Q
           |||||||||||||||| |||||||||    
T  43070810 tttttttcaaacacaccaatatgtccattgatg 43070778  T

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