View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0095_low_79 (Length: 227)
Name: NF0095_low_79
Description: NF0095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0095_low_79 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 30782738 - 30782518
Alignment:
| Q |
7 |
aattcctcttttacaagacacgtgactttaacaacattatttatagtgtcaaggtctttataagttttatcgaaattaaggtctttatagtgtcaaatct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782738 |
aattcctcttttacaagacacgtgactttaacaacattatttatagtgtcaaggtctttataagttttatcgaaattaaggtctttatagtgtcaaatct |
30782639 |
T |
|
| Q |
107 |
ggacataactcgctaatagagagcatcaaaaccattattgcaataaataacaagacacgttttgttgcaggtataaggactctctaccacaaatctggac |
206 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30782638 |
ggacataactcgctaatagagagcataaaaaccattattgcaataaataacaagacacgttttgttgcaggtataaggactctctaccacaaatctggac |
30782539 |
T |
|
| Q |
207 |
ataactcgctagtagagagca |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30782538 |
ataactcgctagtagagagca |
30782518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 30245741 - 30245591
Alignment:
| Q |
7 |
aattcctcttttacaagacacgtgactttaacaacattatttatagtgtcaaggtctttataagttttatcgaaattaaggtctttatagtgtcaaatct |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
30245741 |
aattcctcttttacaagaaacgtgactttaacaacattatttatagtgtcaaggtgtttataggttttatcaaaattatagtctttatagtgtcaaatct |
30245642 |
T |
|
| Q |
107 |
ggacataactcgctaatagagagcatcaaaaccattattgcaataaataacaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
30245641 |
ggacataactcgctaatagagagcatcaaaaccat--ttgcaataaacaacaa |
30245591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 30005377 - 30005306
Alignment:
| Q |
8 |
attcctcttttacaagacacgtgactttaacaacattatttat--agtgtcaaggtctttataagttttatc |
77 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
30005377 |
attcatcttttctaagacacgtgactttaacaacatcatttatagagtgtcaaggtctttatatgttttatc |
30005306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 30062081 - 30062036
Alignment:
| Q |
8 |
attcctcttttacaagacacgtgactttaacaacattatttatagt |
53 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
30062081 |
attcatcttttgtaagacacgtgactttaacaacatcatttatagt |
30062036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 30782549 - 30782512
Alignment:
| Q |
100 |
caaatctggacataactcgctaatagagagcatcaaaa |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
30782549 |
caaatctggacataactcgctagtagagagcataaaaa |
30782512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1088 times since January 2019
Visitors: 1291