View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0096-Insertion-1 (Length: 702)

Name: NF0096-Insertion-1
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0096-Insertion-1
NF0096-Insertion-1
[»] chr5 (15 HSPs)
chr5 (472-702)||(2905544-2905774)
chr5 (7-127)||(2905321-2905441)
chr5 (269-392)||(2845753-2845875)
chr5 (269-311)||(2857574-2857616)
chr5 (269-311)||(2875184-2875226)
chr5 (322-392)||(170572-170642)
chr5 (427-508)||(2845956-2846037)
chr5 (427-508)||(2857777-2857858)
chr5 (322-383)||(7369726-7369787)
chr5 (322-378)||(15480329-15480385)
chr5 (321-377)||(21209941-21209997)
chr5 (321-377)||(24487665-24487721)
chr5 (322-378)||(24528547-24528603)
chr5 (322-378)||(41666778-41666834)
chr5 (322-378)||(41667014-41667070)
[»] chr7 (8 HSPs)
chr7 (322-378)||(31485445-31485501)
chr7 (315-378)||(43085551-43085614)
chr7 (322-378)||(3038105-3038161)
chr7 (322-378)||(15317559-15317615)
chr7 (322-378)||(20305684-20305740)
chr7 (322-378)||(25620143-25620199)
chr7 (315-375)||(40991758-40991818)
chr7 (322-378)||(48243082-48243138)
[»] chr4 (8 HSPs)
chr4 (321-378)||(35796762-35796819)
chr4 (322-378)||(39902584-39902640)
chr4 (315-378)||(400579-400642)
chr4 (322-380)||(6666221-6666279)
chr4 (322-383)||(25323819-25323880)
chr4 (322-378)||(28245547-28245603)
chr4 (324-392)||(35609513-35609581)
chr4 (321-377)||(35796997-35797053)
[»] chr6 (9 HSPs)
chr6 (322-378)||(12329965-12330021)
chr6 (315-375)||(20830760-20830820)
chr6 (322-377)||(11085589-11085644)
chr6 (326-380)||(28648973-28649027)
chr6 (322-378)||(4868598-4868654)
chr6 (322-378)||(4868834-4868890)
chr6 (322-378)||(9705261-9705317)
chr6 (322-378)||(12330200-12330256)
chr6 (321-377)||(27772954-27773010)
[»] chr2 (4 HSPs)
chr2 (322-378)||(16533554-16533610)
chr2 (322-378)||(16419509-16419565)
chr2 (322-378)||(40379230-40379286)
chr2 (322-378)||(40379465-40379521)
[»] chr1 (8 HSPs)
chr1 (322-378)||(855988-856044)
chr1 (322-378)||(39348373-39348429)
chr1 (322-378)||(52650792-52650848)
chr1 (324-383)||(52907386-52907445)
chr1 (322-392)||(31181534-31181604)
chr1 (322-378)||(4113027-4113083)
chr1 (322-378)||(15986354-15986410)
chr1 (322-378)||(40079159-40079215)
[»] chr8 (6 HSPs)
chr8 (322-377)||(18939318-18939373)
chr8 (322-380)||(37001469-37001527)
chr8 (322-383)||(38475749-38475810)
chr8 (322-378)||(5590389-5590445)
chr8 (322-378)||(38447448-38447504)
chr8 (322-378)||(39052950-39053006)
[»] chr3 (9 HSPs)
chr3 (322-377)||(9273203-9273258)
chr3 (322-378)||(22729107-22729163)
chr3 (325-377)||(23691216-23691268)
chr3 (325-377)||(23708016-23708068)
chr3 (325-377)||(23726472-23726524)
chr3 (325-377)||(23744928-23744980)
chr3 (325-377)||(24063453-24063505)
chr3 (322-378)||(35038449-35038505)
chr3 (324-392)||(50930695-50930763)


Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 472 - 702
Target Start/End: Original strand, 2905544 - 2905774
Alignment:
Q  472 tttctcaagcatatttcatccccaacaaattgtagttttgtctaaaattatttaaccattgttctgtaattttgttttcatttttgtaggataatgtctg 571  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2905544 tttctcaagcatatttcatccccaacaaattgcagttttgtctaaaattatttaaccattgttctataattttgttttcatttttgtaggataatgtctg 2905643  T
Q  572 tgagtaaaaatagagtgtgtcatccatatattttgtgcacagatttgagcaatgagttgtaccagaggacgtatcgttttgaagaactcaagttcatttt 671  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2905644 tgagtaaaaatagagtgtgtcatccatatattttgtgcacagatttgagcaatgagttgtaccagaggacgtatcgttttgaagaacccaagttcatttt 2905743  T
Q  672 ttggatggaacaactctactttttcatggcg 702  Q
    |||||||||||||||||||||||||||||||    
T  2905744 ttggatggaacaactctactttttcatggcg 2905774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 7 - 127
Target Start/End: Original strand, 2905321 - 2905441
Alignment:
Q  7 acatgtgtgaatttcgtatgttgcttcctatgttttgattccatgtttgacattctagttggtgaaaggaatgcttgttattacatatagatcttctcac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2905321 acatgtgtgaatttcgtatgttgcttcctatgttttgattccatgtttggcattctagttggtgaaaggaatgcttgttattacatatagatcttctcac 2905420  T
Q  107 ttaaggttgtgatttatcatc 127  Q
    |||||||||||||||||||||    
T  2905421 ttaaggttgtgatttatcatc 2905441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 269 - 392
Target Start/End: Original strand, 2845753 - 2845875
Alignment:
Q  269 tatttgttaataattacatcttataaatttctattagaaatgtgttttgagtttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccac 368  Q
    ||||| |||||||||||||||||||||||||| ||||||||||   ||| || |||||||||   |||||||| | ||  |||||  ||||||    |||    
T  2845753 tatttattaataattacatcttataaatttctcttagaaatgtaacttg-gtctaacacaactctacaaaaccggcttaagatgttagaattgttttcac 2845851  T
Q  369 gtataaacacttgttgagaccatc 392  Q
     |||||||||||||||||||||||    
T  2845852 atataaacacttgttgagaccatc 2845875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 2857574 - 2857616
Alignment:
Q  269 tatttgttaataattacatcttataaatttctattagaaatgt 311  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  2857574 tatttattaataattacatcttataaatttctcttagaaatgt 2857616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 2875184 - 2875226
Alignment:
Q  269 tatttgttaataattacatcttataaatttctattagaaatgt 311  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  2875184 tatttattaataattacatcttataaatttctcttagaaatgt 2875226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 170572 - 170642
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgttgagaccatc 392  Q
    |||||||||||||||||||| | |||||| ||| | | ||||||||| ||||||||| || | ||||||||    
T  170572 taacacaacctcacaaaaccggcttgtgaggtgaggactgcccccacttataaacacatgcttagaccatc 170642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 2845956 - 2846037
Alignment:
Q  427 taatgtcgattttaggatcttccttagttgttgagatgtaaatagtttctcaagcatatttcatccccaacaaattgtagtt 508  Q
    |||||| | |||| |||||||||||  ||||| || |||  |||||||||||||  ||||| |||||| |||||||||||||    
T  2845956 taatgttggtttttggatcttccttgtttgtttagttgtggatagtttctcaagactattttatcccctacaaattgtagtt 2846037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 508
Target Start/End: Original strand, 2857777 - 2857858
Alignment:
Q  427 taatgtcgattttaggatcttccttagttgttgagatgtaaatagtttctcaagcatatttcatccccaacaaattgtagtt 508  Q
    |||||| | |||| |||||||||||  ||||| || |||  |||||||||||||  ||||| |||||| |||||||||||||    
T  2857777 taatgttggtttttggatcttccttgtttgtttagttgtggatagtttctcaagactattttatcccctacaaattgtagtt 2857858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 7369787 - 7369726
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgtt 383  Q
    |||||||||| ||||||||| | |||||| ||| | | ||||||||| ||||||||||||||    
T  7369787 taacacaaccccacaaaaccggcttgtgaggtgaggactgcccccacttataaacacttgtt 7369726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 15480385 - 15480329
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    ||||| |||| ||||||||||| |||||| ||| | ||||||||||| |||||||||    
T  15480385 taacagaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 15480329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 21209941 - 21209997
Alignment:
Q  321 ttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||| ||||||||| | |||||| ||| |||||| |||||| ||||||||    
T  21209941 ttaacacaaccccacaaaaccggcttgtgaggtgagaattgtccccacttataaaca 21209997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 24487665 - 24487721
Alignment:
Q  321 ttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||||||| | |||||| ||| | ||| ||||||| ||||||||    
T  24487665 ttaacacaacctcacaaaaccggcttgtgaggtgaggattacccccacttataaaca 24487721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 24528603 - 24528547
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  24528603 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 24528547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 41666778 - 41666834
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  41666778 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 41666834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 41667014 - 41667070
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  41667014 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 41667070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 31485445 - 31485501
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||    
T  31485445 taacacaacctcacaaaaccagtttgtgatgtgaggattgcccccacttataaacac 31485501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 43085551 - 43085614
Alignment:
Q  315 ttgagtttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    ||||| ||||||||||| ||||||||||  |||||| ||| | ||||||||||| |||||||||    
T  43085551 ttgagcttaacacaaccccacaaaaccaacttgtgaggtgaggattgcccccacttataaacac 43085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 3038105 - 3038161
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  3038105 taacacaaccccacaaaaccggcttgtgacgtgaggattgcccccacttataaacac 3038161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 15317615 - 15317559
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||  |||||||| ||||||||| ||| | ||||||||||| |||||||||    
T  15317615 taacacaacaccacaaaactagtttgtgaggtgaggattgcccccacttataaacac 15317559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 20305684 - 20305740
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| |||||||  ||||||||| ||| | ||||||||||| |||||||||    
T  20305684 taacacaaccccacaaaataagtttgtgaggtgaggattgcccccacttataaacac 20305740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 25620199 - 25620143
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  25620199 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 25620143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 40991758 - 40991818
Alignment:
Q  315 ttgagtttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaa 375  Q
    |||||| |||||||||||||||||||||| ||||||  || | ||| ||||||| ||||||    
T  40991758 ttgagtctaacacaacctcacaaaaccagattgtgagatgaggattacccccacttataaa 40991818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 48243082 - 48243138
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  48243082 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 48243138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 35796762 - 35796819
Alignment:
Q  321 ttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    ||||||||||||||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  35796762 ttaacacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 35796819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 39902584 - 39902640
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||||| |||||| ||| | ||||||||||| |||||||||    
T  39902584 taacacaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 39902640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 400579 - 400642
Alignment:
Q  315 ttgagtttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    ||||| ||||||||||||||||||||| | |||||| ||| | ||| ||||||| |||||||||    
T  400579 ttgagcttaacacaacctcacaaaaccggcttgtgaggtgaggatttcccccacttataaacac 400642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Original strand, 6666221 - 6666279
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacactt 380  Q
    |||||||||| ||||||||| |||||||| ||| | ||||||||||  |||||||||||    
T  6666221 taacacaaccccacaaaacctgtttgtgaggtgaggattgcccccaattataaacactt 6666279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 383
Target Start/End: Original strand, 25323819 - 25323880
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgtt 383  Q
    |||||||||| ||||||||| |  || || ||| | ||||||||||||||||||||||||||    
T  25323819 taacacaaccccacaaaaccggcctgcgaggtgaggattgcccccacgtataaacacttgtt 25323880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 28245547 - 28245603
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  28245547 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 28245603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 35609513 - 35609581
Alignment:
Q  324 acacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgttgagaccatc 392  Q
    |||||||| |||||||||   |||||| ||| | ||||||||||| |||||||||||||| || |||||    
T  35609513 acacaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaacacttgtttaggccatc 35609581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 377
Target Start/End: Original strand, 35796997 - 35797053
Alignment:
Q  321 ttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||| ||||||||  |||||||| ||| | ||||||||||| ||||||||    
T  35796997 ttaacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaaca 35797053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 12329965 - 12330021
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||||||||||| ||| |||||| ||| | ||||||||||| |||||||||    
T  12329965 taacacaacctcacaaaatcagcttgtgaggtgaggattgcccccacttataaacac 12330021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 20830820 - 20830760
Alignment:
Q  315 ttgagtttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaa 375  Q
    |||||| |||||||||||||||||| |||||||||| |||   ||||||||||| ||||||    
T  20830820 ttgagtctaacacaacctcacaaaatcagtttgtgaggtgatgattgcccccacttataaa 20830760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 11085644 - 11085589
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    |||||||||| ||||||||| | |||||| ||| ||||||||||||| ||||||||    
T  11085644 taacacaaccgcacaaaaccggcttgtgaagtgagaattgcccccacttataaaca 11085589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 28648973 - 28649027
Alignment:
Q  326 acaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacactt 380  Q
    ||||||||||||||||| ||||||| ||| | | ||||||||| |||||||||||    
T  28648973 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacactt 28649027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 4868598 - 4868654
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  4868598 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4868654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 4868834 - 4868890
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  4868834 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4868890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 9705317 - 9705261
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  9705317 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 9705261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 12330200 - 12330256
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||||||||||||| | |||||| ||| |  |||||||||| |||||||||    
T  12330200 taacacaacctcacaaaaccggcttgtgaggtgagggttgcccccacttataaacac 12330256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 27773010 - 27772954
Alignment:
Q  321 ttaacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||| | ||||||||||| |||||| ||| | ||||||||||| ||||||||    
T  27773010 ttaacacaatcccacaaaaccagcttgtgaggtgaggattgcccccacttataaaca 27772954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 16533610 - 16533554
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||||||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  16533610 taacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttataaacac 16533554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 16419565 - 16419509
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  16419565 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 16419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 40379230 - 40379286
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  40379230 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 40379286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 40379465 - 40379521
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  40379465 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 40379521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 856044 - 855988
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||| ||||||||||||| |||||| ||| | |||| ||||||||||||||||    
T  856044 taacacaatctcacaaaaccagcttgtgaggtgaggattgtccccacgtataaacac 855988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 39348373 - 39348429
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| |||||||| ||| | ||||||||||| |||||||||    
T  39348373 taacacaaccccacaaaaccggtttgtgaggtgaggattgcccccacttataaacac 39348429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 52650792 - 52650848
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||||| |||||| ||| | ||||||||||| |||||||||    
T  52650792 taacacaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 52650848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 324 - 383
Target Start/End: Complemental strand, 52907445 - 52907386
Alignment:
Q  324 acacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgtt 383  Q
    |||||||| ||||||||||| |||||| ||| | ||||||||||| ||||||||| ||||    
T  52907445 acacaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacacatgtt 52907386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 392
Target Start/End: Original strand, 31181534 - 31181604
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgttgagaccatc 392  Q
    |||||||||| || |||||||| |||||| ||| | ||||||||||| ||||||||| |||| || |||||    
T  31181534 taacacaaccccataaaaccagcttgtgaggtgaggattgcccccacttataaacacatgttcaggccatc 31181604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 4113027 - 4113083
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  4113027 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4113083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 15986354 - 15986410
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||| ||||| |||||| ||| | ||||||||||| |||||||||    
T  15986354 taacacaaccccacaataccagcttgtgaggtgaggattgcccccacttataaacac 15986410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 40079215 - 40079159
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  40079215 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 40079159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Original strand, 18939318 - 18939373
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    |||||||||||||||||| ||| |||||| ||| | ||||||||||| ||||||||    
T  18939318 taacacaacctcacaaaatcagcttgtgaggtgaggattgcccccacttataaaca 18939373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 37001527 - 37001469
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacactt 380  Q
    |||||||||| ||||||||| | |||||||||| | |||| |||||| |||||||||||    
T  37001527 taacacaaccccacaaaaccggcttgtgatgtgaggattgtccccacttataaacactt 37001469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 383
Target Start/End: Complemental strand, 38475810 - 38475749
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgtt 383  Q
    ||||||||||  |||||||| | |||||| ||| | ||||||||||| ||||||||||||||    
T  38475810 taacacaaccctacaaaaccggcttgtgaggtgaggattgcccccacttataaacacttgtt 38475749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 5590389 - 5590445
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||||||||||||| | |||||| ||| | ||||||||||| | |||||||    
T  5590389 taacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaacac 5590445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 38447448 - 38447504
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  38447448 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 38447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 39052950 - 39053006
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||| | |||||| ||| | ||||||||||| |||||||||    
T  39052950 taacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 39053006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 377
Target Start/End: Complemental strand, 9273258 - 9273203
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    |||||||||| ||||||||||| |||||| ||| | ||||||||||| ||||||||    
T  9273258 taacacaaccccacaaaaccagcttgtgaagtgaggattgcccccacttataaaca 9273203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Complemental strand, 22729163 - 22729107
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||||||||||||| | |||||| ||| | ||||||||||| | |||||||    
T  22729163 taacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaacac 22729107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 23691216 - 23691268
Alignment:
Q  325 cacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||| | |||||| ||| | ||||||||||| ||||||||    
T  23691216 cacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 23708016 - 23708068
Alignment:
Q  325 cacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||| | |||||| ||| | ||||||||||| ||||||||    
T  23708016 cacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23708068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 23726472 - 23726524
Alignment:
Q  325 cacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||| | |||||| ||| | ||||||||||| ||||||||    
T  23726472 cacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23726524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 23744928 - 23744980
Alignment:
Q  325 cacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||| | |||||| ||| | ||||||||||| ||||||||    
T  23744928 cacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 24063453 - 24063505
Alignment:
Q  325 cacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaaca 377  Q
    ||||||||||||||||| | |||||| ||| | ||||||||||| ||||||||    
T  24063453 cacaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 24063505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 35038449 - 35038505
Alignment:
Q  322 taacacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacac 378  Q
    |||||||||| ||||||||||| |||| | ||| | ||||||||||| |||||||||    
T  35038449 taacacaaccccacaaaaccagcttgtcaggtgaggattgcccccacttataaacac 35038505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 392
Target Start/End: Complemental strand, 50930763 - 50930695
Alignment:
Q  324 acacaacctcacaaaaccagtttgtgatgtgtgaattgcccccacgtataaacacttgttgagaccatc 392  Q
    |||||||| |||||||||  ||||||| ||| | ||||||||||| ||||||||| |||| || |||||    
T  50930763 acacaaccccacaaaaccgttttgtgaggtgaggattgcccccacttataaacacatgttaaggccatc 50930695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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