View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096-Insertion-2 (Length: 671)
Name: NF0096-Insertion-2
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096-Insertion-2 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 219 - 463
Target Start/End: Complemental strand, 4388936 - 4388692
Alignment:
| Q |
219 |
aaaccgtccaacaagttatctgtgtaactaatcttcattcttctctttctcttcatgatgcaataattttcttgattcttgaagcttgctataaacataa |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388936 |
aaactgtccaacaagttatctgtgtaactaatcttcattcttctctttctcttcatgatgcaataattttcttgattcttgaagcttgctataaacataa |
4388837 |
T |
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| Q |
319 |
gtttttccatgtctctaatgtattccacttctaaattcaaccgctccatcatatgaagcatctcctcgctttccaacagacaacttgtctcaataatcat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4388836 |
gtttttccatgtctctaatgtattccacttctaaattcaaccgctccatcatatgaagcatctcctcgctttccaaaagacaacttgtctcaataatcat |
4388737 |
T |
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| Q |
419 |
gctgctctttgtagtcatgaaatattttcttcacaaataataatc |
463 |
Q |
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| T |
4388736 |
gctgctctttgtagtcatgaaatattttcttcacaaataataatc |
4388692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 4389172 - 4388956
Alignment:
| Q |
7 |
acacactcttccttcattgaccattttcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtattatgag |
106 |
Q |
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| T |
4389172 |
acacactcttccttcattgaccattttcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtattatgag |
4389073 |
T |
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| Q |
107 |
agaagaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatgat |
206 |
Q |
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| T |
4389072 |
agaagaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatgat |
4388973 |
T |
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| Q |
207 |
tgtagactatagaaacc |
223 |
Q |
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| T |
4388972 |
tgtagactatagaaacc |
4388956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 466 - 671
Target Start/End: Complemental strand, 4388658 - 4388452
Alignment:
| Q |
466 |
tgtatcctttctcctcaagtggttttgtccttcttttgttcctttacaatatgatgcgccaaatttgtattggagctcatcaaagcatccttaaaagaca |
565 |
Q |
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| T |
4388658 |
tgtatcctttctcctcaagtggttttgtccttcttttgttcctttacaatatgatgcgccaaatttgtattggagctcatcaaagcatccttaaaagaca |
4388559 |
T |
|
| Q |
566 |
tgtagtcttggaatttacc-ccactcttggtgtttctatcatgtttttcatgtagaatgctcttctttctatcatactttgcctaattgacaatttagtc |
664 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4388558 |
tgtagtcttggaatttaccaccactcttggtgtttctatcatgtttttcatgtagaatgctcttctttctatcatactttgcctaattgacaatttagtt |
4388459 |
T |
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| Q |
665 |
gtcttcc |
671 |
Q |
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||||||| |
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| T |
4388458 |
gtcttcc |
4388452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 13933 - 14027
Alignment:
| Q |
111 |
gaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatga |
205 |
Q |
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| T |
13933 |
gaaatgaacgaagtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggtgtatgatagctatattacaatga |
14027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 2896 - 2837
Alignment:
| Q |
123 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
182 |
Q |
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||||||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||| |
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| T |
2896 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
2837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 7645 - 7586
Alignment:
| Q |
123 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
182 |
Q |
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| T |
7645 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
7586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 17785 - 17726
Alignment:
| Q |
123 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
182 |
Q |
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||||||||||||| ||||| |||||||||| |||||||| |||||||| |||||||||| |
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| T |
17785 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
17726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 5842743 - 5842684
Alignment:
| Q |
123 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
182 |
Q |
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| T |
5842743 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
5842684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 9606639 - 9606683
Alignment:
| Q |
98 |
tattatgagagaagaaatgaatcaagtaaattctcattaattgat |
142 |
Q |
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|||||||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
9606639 |
tattatgaaagaagaaatgaatgaagtaaattatcattaattgat |
9606683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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