View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0096-Insertion-3 (Length: 388)

Name: NF0096-Insertion-3
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0096-Insertion-3
NF0096-Insertion-3
[»] chr5 (12 HSPs)
chr5 (8-183)||(14245259-14245434)
chr5 (274-388)||(14245980-14246095)
chr5 (178-260)||(14245467-14245549)
chr5 (274-375)||(14380124-14380225)
chr5 (8-44)||(14245083-14245119)
chr5 (8-46)||(5688603-5688641)
chr5 (8-42)||(13634708-13634742)
chr5 (8-42)||(15986837-15986871)
chr5 (8-41)||(9856888-9856921)
chr5 (8-41)||(20147083-20147116)
chr5 (10-43)||(26414889-26414922)
chr5 (10-42)||(40305880-40305912)
[»] chr2 (5 HSPs)
chr2 (178-258)||(23748847-23748927)
chr2 (8-43)||(15224907-15224942)
chr2 (8-41)||(17380054-17380087)
chr2 (8-41)||(36347539-36347572)
chr2 (8-41)||(42813833-42813866)
[»] chr3 (3 HSPs)
chr3 (8-43)||(24560213-24560248)
chr3 (8-42)||(651737-651771)
chr3 (9-43)||(24253717-24253751)
[»] chr1 (9 HSPs)
chr1 (51-176)||(23547850-23547975)
chr1 (178-232)||(23548015-23548069)
chr1 (8-42)||(38510107-38510141)
chr1 (8-42)||(51303381-51303415)
chr1 (8-41)||(12234008-12234041)
chr1 (8-41)||(41498402-41498435)
chr1 (8-44)||(1085484-1085520)
chr1 (8-40)||(26324013-26324045)
chr1 (14-46)||(40095153-40095185)
[»] chr7 (6 HSPs)
chr7 (8-44)||(37925836-37925872)
chr7 (8-43)||(1051711-1051746)
chr7 (8-43)||(37417836-37417871)
chr7 (8-41)||(39856078-39856111)
chr7 (8-41)||(48881762-48881795)
chr7 (8-48)||(40196734-40196774)
[»] chr6 (5 HSPs)
chr6 (8-44)||(4097230-4097266)
chr6 (8-44)||(14515468-14515504)
chr6 (8-43)||(3841299-3841334)
chr6 (8-41)||(10818227-10818260)
chr6 (8-44)||(1300624-1300660)
[»] chr8 (7 HSPs)
chr8 (8-43)||(12022356-12022391)
chr8 (8-42)||(43732676-43732710)
chr8 (12-41)||(1027065-1027094)
chr8 (8-41)||(8815354-8815387)
chr8 (8-48)||(1281134-1281174)
chr8 (10-42)||(6315063-6315095)
chr8 (8-44)||(36308847-36308883)
[»] chr4 (7 HSPs)
chr4 (8-42)||(49735465-49735499)
chr4 (8-42)||(56135746-56135780)
chr4 (8-41)||(1968572-1968605)
chr4 (8-41)||(29993769-29993802)
chr4 (8-41)||(37711136-37711169)
chr4 (8-41)||(54935065-54935098)
chr4 (9-41)||(54320433-54320465)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 14245259 - 14245434
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagagaactgaggtggctgaagcggtagtcgctgatgttttgggtttcaggtggggactccaagtggc 107  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14245259 cccctcctaaaccctcaatccaaacacaccctaagagaactgaggtggctgaagcggtagtcgctgatgttttgggtttcaggtggggactccaagtggc 14245358  T
Q  108 tgcggaacttaatcttaacaaggtcatctttgaactggatgcgcaggtggtgattaattgtttcaaagggctgtca 183  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14245359 tgcggaacttaatcttaacaaggtcatctttgaactggatgcacaggtggtgattaattgtttcaaagggctgtca 14245434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 388
Target Start/End: Original strand, 14245980 - 14246095
Alignment:
Q  274 atttcactaatttcacactataccatcagtttaaacatactctcgagtcttagataatgggttgtgagattacacaattattagcccttgcataggaaaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14245980 atttcactaatttcacactataccatcagtttaaacatactcttgagtctt-gataatgggttgtgagattacacaattattagcccttgcttaggaaaa 14246078  T
Q  374 taata--gagttatttg 388  Q
    |||||  ||||||||||    
T  14246079 taatattgagttatttg 14246095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 14245467 - 14245549
Alignment:
Q  178 ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcctgagctag 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14245467 ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcgtgagctag 14245549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 14380225 - 14380124
Alignment:
Q  274 atttcactaatttcacactataccatcagtttaaacatactctcgagtcttagataatgggttgtgagattacacaattattagcccttgcataggaaaa 373  Q
    ||||||||  || ||||||||||||||| ||| |||||||||||||||||||| ||||||| |||||  |||||||||| ||| ||||||| ||||||||    
T  14380225 atttcactggttccacactataccatcaatttgaacatactctcgagtcttagctaatgggctgtgattttacacaattgttaacccttgcttaggaaaa 14380126  T
Q  374 ta 375  Q
    ||    
T  14380125 ta 14380124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14245119 - 14245083
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14245119 cccctcctaaaccctcaatccaaacacacccttagag 14245083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 5688603 - 5688641
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagagaa 46  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  5688603 cccctcctaaaccctcaatccaaacacaccctaagagaa 5688641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 13634742 - 13634708
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  13634742 cccctcctaaaccctcaatccaaacacacccttag 13634708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 15986837 - 15986871
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  15986837 cccctcctaaaccctcaatccaaacacacccttag 15986871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 9856921 - 9856888
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  9856921 cccctcctaaaccctcaatccaaacacaccctta 9856888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 20147083 - 20147116
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  20147083 cccctcctaaaccctcaatccaaacacaccctta 20147116  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 26414922 - 26414889
Alignment:
Q  10 cctcctaaacccttaatccaaacacacccttaga 43  Q
    ||||||||||||| ||||||||||||||||||||    
T  26414922 cctcctaaaccctcaatccaaacacacccttaga 26414889  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 40305880 - 40305912
Alignment:
Q  10 cctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||| |||||||||||||||||||    
T  40305880 cctcctaaaccctcaatccaaacacacccttag 40305912  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 258
Target Start/End: Original strand, 23748847 - 23748927
Alignment:
Q  178 ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgtgcctgcaatgaggttgcgcctgagct 258  Q
    |||||| || |||||||||||||||| |||||||||||||||||  |||||||||| ||| ||| ||| ||||| ||||||    
T  23748847 ctgtcacgaattgtatgccaatatggctgatgtttctgttttttttattagtcgtgtctgaaataaggctgcgcatgagct 23748927  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 15224907 - 15224942
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    |||||||||||||||| |||||||||||||||||||    
T  15224907 cccctcctaaacccttgatccaaacacacccttaga 15224942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 17380054 - 17380087
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  17380054 cccctcctaaaccctcaatccaaacacaccctta 17380087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 36347572 - 36347539
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    |||||||||||||||| |||||||||||||||||    
T  36347572 cccctcctaaacccttcatccaaacacaccctta 36347539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 42813833 - 42813866
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    |||||||||||||||| |||||||||||||||||    
T  42813833 cccctcctaaacccttcatccaaacacaccctta 42813866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 24560248 - 24560213
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    ||||||||||||||||||||||||||||||||||||    
T  24560248 cccctcctaaacccttaatccaaacacacccttaga 24560213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 651771 - 651737
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  651771 cccctcctaaaccctcaatccaaacacacccttag 651737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 24253751 - 24253717
Alignment:
Q  9 ccctcctaaacccttaatccaaacacacccttaga 43  Q
    |||||||||||||| ||||||||||||||||||||    
T  24253751 ccctcctaaaccctcaatccaaacacacccttaga 24253717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 23547850 - 23547975
Alignment:
Q  51 ggtggctgaagcggtagtcgctgatgttttgggtttcaggtggggactccaagtggctgcggaacttaatcttaacaaggtcatctttgaactggatgcg 150  Q
    |||||||||| | || || ||||| || ||||||||||||||||| |||||||||||  ||||||  |  |||| | | || || ||||| ||| |||||    
T  23547850 ggtggctgaacctgttgttgctgaagtcttgggtttcaggtggggtctccaagtggcaacggaacgaagacttagccatgttatttttgagctgaatgcg 23547949  T
Q  151 caggtggtgattaattgtttcaaagg 176  Q
    ||||| ||| ||||||| ||||||||    
T  23547950 caggttgtggttaattgcttcaaagg 23547975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 23548015 - 23548069
Alignment:
Q  178 ctgtcatgagttgtatgccaatatggttgatgtttctgttttttacattagtcgt 232  Q
    |||||| || |||||||||||||||| ||||||||||||| |||  |||||||||    
T  23548015 ctgtcacgatttgtatgccaatatggctgatgtttctgttgtttttattagtcgt 23548069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 38510107 - 38510141
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||||||||||||||||| |||||    
T  38510107 cccctcctaaacccttaatccaaacacactcttag 38510141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 51303415 - 51303381
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  51303415 cccctcctaaaccctcaatccaaacacacccttag 51303381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 12234041 - 12234008
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  12234041 cccctcctaaaccctcaatccaaacacaccctta 12234008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 41498435 - 41498402
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  41498435 cccctcctaaaccctcaatccaaacacaccctta 41498402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1085520 - 1085484
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    |||||||||||||||  ||||||||||||||||||||    
T  1085520 cccctcctaaaccctccatccaaacacacccttagag 1085484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 26324045 - 26324013
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctt 40  Q
    ||||||||||||||| |||||||||||||||||    
T  26324045 cccctcctaaaccctcaatccaaacacaccctt 26324013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 40095153 - 40095185
Alignment:
Q  14 ctaaacccttaatccaaacacacccttagagaa 46  Q
    ||||||||| |||||||||||||||||||||||    
T  40095153 ctaaaccctcaatccaaacacacccttagagaa 40095185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 37925872 - 37925836
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37925872 cccctcctaaaccctcaatccaaacacacccttagag 37925836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 1051711 - 1051746
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1051711 cccctcctaaaccctcaatccaaacacacccttaga 1051746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 37417836 - 37417871
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    ||||||||||||||| ||||||||||||||||||||    
T  37417836 cccctcctaaaccctcaatccaaacacacccttaga 37417871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 39856078 - 39856111
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  39856078 cccctcctaaaccctcaatccaaacacaccctta 39856111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 48881762 - 48881795
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  48881762 cccctcctaaaccctcaatccaaacacaccctta 48881795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 40196734 - 40196774
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagagaact 48  Q
    ||||||| ||||||| |||||||| ||||||||||||||||    
T  40196734 cccctcccaaaccctcaatccaaatacacccttagagaact 40196774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 4097266 - 4097230
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4097266 cccctcctaaaccctcaatccaaacacacccttagag 4097230  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 14515504 - 14515468
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14515504 cccctcctaaaccctcaatccaaacacacccttagag 14515468  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 3841299 - 3841334
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    |||||||||||||||| |||||||||||||||||||    
T  3841299 cccctcctaaacccttcatccaaacacacccttaga 3841334  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 10818260 - 10818227
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  10818260 cccctcctaaaccctcaatccaaacacaccctta 10818227  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 1300660 - 1300624
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  1300660 cccctcctaaaccctcaatccaaacacaccctaagag 1300624  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 43
Target Start/End: Original strand, 12022356 - 12022391
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttaga 43  Q
    ||||||||||||||| ||||||||||||||||||||    
T  12022356 cccctcctaaaccctcaatccaaacacacccttaga 12022391  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 43732710 - 43732676
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  43732710 cccctcctaaaccctcaatccaaacacacccttag 43732676  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 1027065 - 1027094
Alignment:
Q  12 tcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||||||||||||||||||    
T  1027065 tcctaaacccttaatccaaacacaccctta 1027094  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 8815354 - 8815387
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  8815354 cccctcctaaaccctcaatccaaacacaccctta 8815387  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1281174 - 1281134
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagagaact 48  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  1281174 cccctcctaaaccctcaatccaaacaaatccttagagaact 1281134  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 6315095 - 6315063
Alignment:
Q  10 cctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||| |||||||||||||||||||    
T  6315095 cctcctaaaccctcaatccaaacacacccttag 6315063  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 36308883 - 36308847
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttagag 44  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  36308883 cccctcccaaacccttaatccaaacacaccctaagag 36308847  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 49735499 - 49735465
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  49735499 cccctcctaaaccctcaatccaaacacacccttag 49735465  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 56135780 - 56135746
Alignment:
Q  8 cccctcctaaacccttaatccaaacacacccttag 42  Q
    ||||||||||||||| |||||||||||||||||||    
T  56135780 cccctcctaaaccctcaatccaaacacacccttag 56135746  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 1968572 - 1968605
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  1968572 cccctcctaaaccctcaatccaaacacaccctta 1968605  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 29993802 - 29993769
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||||||||||||||||| ||||    
T  29993802 cccctcctaaacccttaatccaaacacactctta 29993769  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 37711169 - 37711136
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  37711169 cccctcctaaaccctcaatccaaacacaccctta 37711136  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 54935098 - 54935065
Alignment:
Q  8 cccctcctaaacccttaatccaaacacaccctta 41  Q
    ||||||||||||||| ||||||||||||||||||    
T  54935098 cccctcctaaaccctcaatccaaacacaccctta 54935065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 54320465 - 54320433
Alignment:
Q  9 ccctcctaaacccttaatccaaacacaccctta 41  Q
    |||||||||||||| ||||||||||||||||||    
T  54320465 ccctcctaaaccctcaatccaaacacaccctta 54320433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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