View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096-Insertion-5 (Length: 193)
Name: NF0096-Insertion-5
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096-Insertion-5 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 2489976 - 2489791
Alignment:
| Q |
8 |
aggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttg |
107 |
Q |
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| T |
2489976 |
aggacaagaatacgatcctctgatttcgaggtaagtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttg |
2489877 |
T |
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| Q |
108 |
ttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggaca |
193 |
Q |
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| T |
2489876 |
ttcgctgcccaagcatactgtcaacctcatcgacaaatataatagttggggagaccttggctgccagtgtgaataaagctcggaca |
2489791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 4e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 4e-52
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 41591049 - 41591188
Alignment:
| Q |
47 |
tcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcgacaaata |
146 |
Q |
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| T |
41591049 |
tcccaatgggacataaattcattctttattttccgcatggcttcatgctccccaactcttgttcgttgcccaagcatgctatcaacctcatcgacaaata |
41591148 |
T |
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| Q |
147 |
taatagttggggagaccttggctgccagtgtgaataaagc |
186 |
Q |
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| T |
41591149 |
taatagttggggagactttggatgcaagtgtgaataaagc |
41591188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 11094442 - 11094594
Alignment:
| Q |
41 |
agtccatcccaattggacatgaattcattctttattttccgcatggcttcatgttccccaactcttgttcgctgcccaagcatactgtcaacctcatcga |
140 |
Q |
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||||||||||||| | |||||||||||| || || |||| |||||| |||||||| || ||||| || ||||| || ||||| |||||||| ||||||| |
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| T |
11094442 |
agtccatcccaatgtgtcatgaattcatttttaatcttcctcatggcctcatgttctccgactctagtacgctgaccgagcatgctgtcaacttcatcga |
11094541 |
T |
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| Q |
141 |
caaatataatagttggggagaccttggctgccagtgtgaataaagctcggaca |
193 |
Q |
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| T |
11094542 |
cgaatataatagtcggagcaaccttagctgctagcgtgaacaaagctcggaca |
11094594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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