View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_high_1 (Length: 560)
Name: NF0096_high_1
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 3698517 - 3698961
Alignment:
| Q |
13 |
gagagggaaaaaataagccaaaatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698517 |
gagagggaaaaaataagccaaaatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcat |
3698616 |
T |
|
| Q |
113 |
tgaaaaagtggtgatctaaacaagtatcaattacatcaaaccgcttcaactgatctgaaccattgctgtctaaagaaaccggagcaccgctcctctcatg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
3698617 |
tgaaaaagtggtgatctaaacaagtatcaattacatcaaaccgcttcaactgatctgaaccattgctgtctaaagaaaccggagcactgctcctctcatg |
3698716 |
T |
|
| Q |
213 |
aatcctaataacttcaccatatggagttgggtcttcagtagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatctttc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698717 |
aatcctaataacttcaccatatggagttgggtcttcagtagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatctttc |
3698816 |
T |
|
| Q |
313 |
ttgtcgacaaaatcgggcgcatttccctcttcaaatgtagggactgtggaaatagctccataaaatgatgtcatgccaagtttttggaaaatgccggctt |
412 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3698817 |
ttgtcaacaaaatcgggcgcatttccctcttcaaatgtagggactgtggaaacagctccataaaatgatgtcatgccaagtttttggaaaatgccggctt |
3698916 |
T |
|
| Q |
413 |
taatgctggagaaaagttcaagggcagcttgaggaagggaaaacg |
457 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3698917 |
taatgctagagaaaagttcaagggcagcttgaggaagggaaaacg |
3698961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 6605020 - 6604578
Alignment:
| Q |
13 |
gagagggaaaaaa-taagccaaaatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctca |
111 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
6605020 |
gagagggaaaaaagtatgccaaaatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatatcggca-cccttttctctca |
6604922 |
T |
|
| Q |
112 |
ttgaaaaagtggtgatctaaacaagtatcaattacatcaaaccgcttcaactgatctgaaccattgctgtctaaagaaaccggagcaccgctcctctcat |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| ||||||||||| |
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|
| T |
6604921 |
ttgaaaaagtggtgatctgaacaagtatcaattacatcaaaccgcttcaactgatccgaaccattgctgtctgaagaaactggagcatcgctcctctcac |
6604822 |
T |
|
| Q |
212 |
gaatcctaataacttcaccatatggagttgggtcttcagtagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatcttt |
311 |
Q |
| |
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|||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6604821 |
gaatcctaataacttcacaataaggagttgagtcttcagtagactgcaacctgctcgcaggatgtgaatcagtctcagggccacaagtttccaaatcttt |
6604722 |
T |
|
| Q |
312 |
cttgtcgacaaaatcgggcgcatttccctcttcaaatgtagggactgtggaaatagctccataaaatgatgtcatgccaagtttttggaaaatgccggct |
411 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
6604721 |
cttgtcgagaaaatcaggcgcatttccctcttcaaatgtagggactgtggaaacaactccataaaatgatgtcgtgccaagtttttggaaaatgctggct |
6604622 |
T |
|
| Q |
412 |
ttaatgctggagaaaagttcaagggcagcttgaggaagggaaaa |
455 |
Q |
| |
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||||| | ||||||||||||||||||| |||||| |||||||| |
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|
| T |
6604621 |
ttaattatagagaaaagttcaagggcagtttgaggcagggaaaa |
6604578 |
T |
|
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