View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_high_12 (Length: 278)
Name: NF0096_high_12
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 52 - 260
Target Start/End: Original strand, 17232874 - 17233090
Alignment:
| Q |
52 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgttnnnnnnnt----taca |
147 |
Q |
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| T |
17232874 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtaca |
17232973 |
T |
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| Q |
148 |
c----agcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccg |
243 |
Q |
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| T |
17232974 |
ctatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccg |
17233073 |
T |
|
| Q |
244 |
acactcctatgctactc |
260 |
Q |
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||||||||||| ||||| |
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| T |
17233074 |
acactcctatgatactc |
17233090 |
T |
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