View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_high_13 (Length: 271)
Name: NF0096_high_13
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 17232874 - 17233089
Alignment:
| Q |
39 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgttnnnnnnnt----taca |
134 |
Q |
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| T |
17232874 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtaca |
17232973 |
T |
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| Q |
135 |
c----agcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccg |
230 |
Q |
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| T |
17232974 |
ctatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccg |
17233073 |
T |
|
| Q |
231 |
acactcctatgatact |
246 |
Q |
| |
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|||||||||||||||| |
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| T |
17233074 |
acactcctatgatact |
17233089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 32676409 - 32676441
Alignment:
| Q |
210 |
ctaggtgtgccgccgtgtccgacactcctatga |
242 |
Q |
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||||||||| ||||||||||||||||||||||| |
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| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatga |
32676441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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