View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0096_high_15 (Length: 226)

Name: NF0096_high_15

Description: NF0096

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF0096_high_15

[»] chr7 (1 HSPs)

Alignment Details

Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 161; E-Value: 5e-86

Query Start/End: Original strand, 52 - 216

Target Start/End: Complemental strand, 40983072 - 40982908

Alignment:

Q	52	cacaaattgggttttctaacgtacctgaccccataaaacattctttgaacgatgaaatgacaggagcagctgtaatgaagaaacaaattccgaaacaaaa	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40983072	cacaaattgggttttctaacgtacctgaccccataaaacattctttgaccgatgaaatgacaggagcagctgtaatgaagaaacaaattccgaaacaaaa	40982973	T

Q	152	gaaactgcatggcatgcccaagagtaccaaactcttgtcaaagcctgatatatctggtctctgtg	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	40982972	gaaactgcatggcatgcccaagagtaccaaactcttgtcaaagcctgatatatctggtctctgtg	40982908	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

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