View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0096_high_2 (Length: 497)
Name: NF0096_high_2
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_high_2 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 3698240 - 3698719
Alignment:
| Q |
17 |
ctgtgatggatattacagcatatctctagtgatttccctttcttgtaagtaaattaactcggacatttatttactcaataggctacttattttcagatta |
116 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698240 |
ctgtgatggatattacagcatatttcgagtgatttccctttcttgcaagtaaattaactcggacatttatttactcaataggctacttattttcagatta |
3698339 |
T |
|
| Q |
117 |
aatattaattgacaataaacattgcttatttagtgagatagtttggttggtttaatttgactgagatagttataataaataaagtgagaagtatgcacca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3698340 |
aatattaattgacaataaacattgcttatttagtgagatagtttggttggtttaatttgactgagatagttataataa-taaagtgagaagtatgcacca |
3698438 |
T |
|
| Q |
217 |
ggaaggtttttctccaggatgctccattcttgctgtacctttttcgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaataagccaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3698439 |
ggaaggtttttctccaggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaataagccaaa |
3698538 |
T |
|
| Q |
317 |
atgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcattgaaaaagtggtgatctaaata |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3698539 |
atgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcattgaaaaagtggtgatctaaaca |
3698638 |
T |
|
| Q |
417 |
tgtatcatttgcatcaaaccacttcaactgatatgaaccaatgatgactaaagaaagcggaccaccgctactctcatgaat |
497 |
Q |
| |
|
|||||| || ||||||||| ||||||||||| ||||||| || || ||||||||| |||| ||| ||| ||||||||||| |
|
|
| T |
3698639 |
agtatcaattacatcaaaccgcttcaactgatctgaaccattgctgtctaaagaaaccggagcactgctcctctcatgaat |
3698719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Complemental strand, 6605297 - 6604818
Alignment:
| Q |
17 |
ctgtgatggatattacagcatatctctagtgatttccctttcttgtaagtaaattaactcggacatttatttactcaataggctacttattttcagatta |
116 |
Q |
| |
|
||||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
6605297 |
ctgtgatggatatgacatcatattttgagtgatttccctttcttgtaagtaaattaactcggacacttatttactcaataggctacttattttcatatta |
6605198 |
T |
|
| Q |
117 |
aatattaattgacaataaacattgcttatttagtgagatagtttggttggtttaatttgactgagatagttataataaataaagtgagaagtatgcacca |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6605197 |
aatattaatggacaataaacattgcttatttagtgagatagtt-ggttggtttaattaggctgagatagttataataaataaagtgagaagtatgcacca |
6605099 |
T |
|
| Q |
217 |
ggaaggtttttctccaggatgctccattcttgctgtacctttttcgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaa-taagccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
6605098 |
ggaaggtttttctccaggatgctccattcttgctgtaccttttttgcccaatctttcttaacctacaaaggagcaaaggagagggaaaaaagtatgccaa |
6604999 |
T |
|
| Q |
316 |
aatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatattggcaacccttttctctcattgaaaaagtggtgatctaaat |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
6604998 |
aatgctttcaatataattatgttacttaagtgatgtgtcaattttataacctgagatatcggc-acccttttctctcattgaaaaagtggtgatctgaac |
6604900 |
T |
|
| Q |
416 |
atgtatcatttgcatcaaaccacttcaactgatatgaaccaatgatgactaaagaaagcggaccaccgctactctcatgaat |
497 |
Q |
| |
|
| |||||| || ||||||||| ||||||||||| |||||| || || || |||||| ||| || |||| |||||| |||| |
|
|
| T |
6604899 |
aagtatcaattacatcaaaccgcttcaactgatccgaaccattgctgtctgaagaaactggagcatcgctcctctcacgaat |
6604818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 35442638 - 35442557
Alignment:
| Q |
205 |
aagtatgcaccaggaaggtttttctccaggatgctccattcttgctgtacctttttcgcccaatctttcttaacctacaaag |
286 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| ||||| |||| || ||||| |||| |
|
|
| T |
35442638 |
aagtatgtaccaggaagacttttctcaaggatgctccattcttgctgaacctttttcacccaacctttttttacctataaag |
35442557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1373 times since January 2019
Visitors: 1298