View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0096_high_5 (Length: 453)
Name: NF0096_high_5
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0096_high_5
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 28 - 355
Target Start/End: Complemental strand, 2490296 - 2489972
Alignment:
Q
28
ttgattttttatgtgcccctcgccccaccacnnnnnnnnnnnnngtatgaatgctaacagtacacactattagacactctttctcaacataacctatatc
127
Q
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2490296
ttgattttttatgtgcccctcgccccaccac---aaaaaaaaaagtatgaatgctaacagtacacactattagacactctttctcaacataacctatatc
2490200
T
Q
128
attgattgaaaaactaacgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagc
227
Q
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2490199
attgattgaaaaactaatgggttttgaaaacaggtccacatgaatttgaactaatagcaaagattgtgttgaaaagtatggtacaaagtgtattgctagc
2490100
T
Q
228
actcttcaggtactaagaaagagcacaaaaaattcattgtacatgtagaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagt
327
Q
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
T
2490099
actcttcaggtactaagaaagagcacaaaaaattcattgtacatgtcgaactagtagaggtaccttctttcaaatcgtctaataattgcttcatccaagt
2490000
T
Q
328
caaagggcctattggttgcagcgaggac
355
Q
||||||||||||||||||||||||||||
T
2489999
caaagggcctattggttgcagcgaggac
2489972
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 41590948 - 41591005
Alignment:
Q
289
accttctttcaaatcgtctaataattgcttcatccaagtcaaagggcctattggttgc
346
Q
|||| ||||||||||| || ||||| ||||||||||||||||| ||||||||||||||
T
41590948
acctcctttcaaatcgccttataatagcttcatccaagtcaaatggcctattggttgc
41591005
T
HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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