View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_10 (Length: 351)
Name: NF0096_low_10
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 112 - 348
Target Start/End: Complemental strand, 52109299 - 52109063
Alignment:
| Q |
112 |
acaacctgtggtgacttatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagccaccttcttcatt |
211 |
Q |
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| T |
52109299 |
acaaccggtggtgaattatgcttaattcattactcttttgaaacctcaaaatttctttaggaacactgttttcttcacacttgaagtcaccttcttcatt |
52109200 |
T |
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| Q |
212 |
ttcaccacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgt |
311 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52109199 |
ttcatcacactccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaatgt |
52109100 |
T |
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| Q |
312 |
taatgtttctaagctactttctcaccaattaaatcca |
348 |
Q |
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| T |
52109099 |
taatgtttccaagctaatttctcaccaattaaatcca |
52109063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 44526294 - 44526207
Alignment:
| Q |
222 |
tccatatttctgcactcagtgcttcacttccactgtcaaatcaatgttcacaagaagaaaattcctcaatatactttcatcacgcaat |
309 |
Q |
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| T |
44526294 |
tccataattctgcacccagtgcttcacttcctctatcaaatcaatgctcacaagaagaaaattcctcactatattctcatcacgcaat |
44526207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 7971840 - 7971789
Alignment:
| Q |
72 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacctgtggt |
123 |
Q |
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| T |
7971840 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggt |
7971789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 8041848 - 8041899
Alignment:
| Q |
72 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacctgtggt |
123 |
Q |
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| T |
8041848 |
cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggt |
8041899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 41382237 - 41382188
Alignment:
| Q |
74 |
tttggtgaaaagttagggttgtggattgtgatgcctcaacaacctgtggt |
123 |
Q |
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| T |
41382237 |
tttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggt |
41382188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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