View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0096_low_12 (Length: 315)
Name: NF0096_low_12
Description: NF0096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0096_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 307
Target Start/End: Original strand, 17232874 - 17233150
Alignment:
| Q |
39 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgttnnnnnnnt----taca |
134 |
Q |
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| T |
17232874 |
ataagattacgaataacaacttaatagcttgagatatatcataataataatgttcaattcaataattgagagctagaaaatgtttgggggagggggtaca |
17232973 |
T |
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| Q |
135 |
c----agcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttataagactaggtgtgccgccgtgtccg |
230 |
Q |
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| T |
17232974 |
ctatcagcctcacgaaacaaaataaaaagctatacatcttaagtcaaagtgaggaaagaattatgaagcacttacaagactaggtgtgccgccgtgtccg |
17233073 |
T |
|
| Q |
231 |
acactcctatgatactcgtcgacacatgttagacaaccaaaaccgatatcctaaataattttttcttcttctctgct |
307 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17233074 |
acactcctatgatactcgtcaacacatgttggacaaccaaaaccgatatcctaaataattttttcttcttctatgct |
17233150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 32676409 - 32676488
Alignment:
| Q |
210 |
ctaggtgtgccgccgtgtccgacactcctatgatactcgt-cgacacatgttagacaaccaaaaccgatatcctaaataa |
288 |
Q |
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||||||||| ||||||||||||||||||||||| ||| || |||||| |||| |||| | | |||||| |||||||||| |
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| T |
32676409 |
ctaggtgtgtcgccgtgtccgacactcctatgacacttgtacgacacgtgttggacagctatgaccgatgtcctaaataa |
32676488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 11411071 - 11411005
Alignment:
| Q |
223 |
cgtgtccgacactcctatgatactcgtc-gacacatgttagacaaccaaaaccgatatcctaaataa |
288 |
Q |
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|||||||||||||||||||| ||| ||| ||||||||| |||||| |||| |||| |||||||||| |
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| T |
11411071 |
cgtgtccgacactcctatgacacttgtctgacacatgtcggacaactaaaatcgatgtcctaaataa |
11411005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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